ViewGene
Locus Name:
GeneID:
Location:

GeneID:3912
TrivialName: PA14_26160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26160
PAO1 Ortholog Locus:PA2929
Sequence Length:615
Protein Length:204
Start: 2283740
Stop: 2284354
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06317.1|AE004719_3 (AE004719) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 203/204 (99%), Positives = 204/204 (100%)
Sequence:
ATGACAGAGTTGCTAGCTTTCCTGACCATCACCGTGCTTGCGGTGATCAGCCCCGGCGCCGATTTCGCCATG
GTCTCGCGCAACAGCCTGCTGTATTCCCGCCGCGCCGGCCTGCTCACCGCGCTGGGCATCGGCGCGGGGGTG
ACGGTACATGTCGGCTACAGCATCCTCGGCGTCGGCGTGCTGGTGCGCGAGTCGCTGGCGCTGTTCACCGCG
CTGAAGCTGGCGGGCGCCGCCTACCTGGTGTTCCTCGGCCTGCGCATGCTGCTGGCGCGAGAGGACACGGTG
GCGGAGGAGGCGGCGGGCGGCGCCGGGGTTTCGTCCTGGGCGATGTTGCGCAGCGGCTTCCTGACCAATGCG
CTCAATCCGAAGACCTGCCTGTTCGTGGTCAGCCTGTTCATGCAGGTGATCGATCCGCATACCGCGTTGCCG
GCGCAACTAGGCTACGGGGCCTTCATCGCGCTCGCCCACGTGGCCTGGTTCGGCCTGGTCGCCTGCTTTCTC
TCGAGCCCGGCGGTGCGCGGCCGGCTCCTGCGTTTCCGCCGGCGCATCGACCAGTTCTTTGGCGCCCTGCTG
GTCGGTTTCGGCGTCCTGCTGGGGGCGAAAAGCCCATGA
Translation:
MTELLAFLTITVLAVISPGADFAMVSRNSLLYSRRAGLLTALGIGAGVTVHVGYSILGVGVLVRESLALFTA
LKLAGAAYLVFLGLRMLLAREDTVAEEAAGGAGVSSWAMLRSGFLTNALNPKTCLFVVSLFMQVIDPHTALP
AQLGYGAFIALAHVAWFGLVACFLSSPAVRGRLLRFRRRIDQFFGALLVGFGVLLGAKSP*
AnnotationID:3919GeneID:3912
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 10:10:26
Gene Name:
Confidence Code:3
GeneProduct:putative threonine efflux protein
Cell Localization:()
Synonyms:PA2929
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative transporter, LysE family
Functional Category Confidence Code:5
COGs:COG1280,pfam01810
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66324.1|AE016261_1 (AE016776) transporter, LysE family [Pseudomonas putida KT2440]
          Length = 204

 Score =  181 bits (458), Expect = 3e-45
 Identities = 93/197 (47%), Positives = 129/197 (65%), Gaps = 1/197 (0%)








 
Structural Features:
COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]
CD-Length = 208 residues,  96.6% aligned
Score =  108 bits (270), Expect = 7e-25
Identities = 86/202 (42%), Positives = 110/202 (54%), Gaps = 4/202 (1%)

pfam01810, LysE, LysE type translocator
CD-Length = 191 residues,  96.9% aligned
Score = 80.7 bits (199), Expect = 1e-16
Identities = 63/187 (33%), Positives = 87/187 (46%), Gaps = 3/187 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7827




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24969




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36117




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3912_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3912
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6150
                           PA2929_tr
                           translation of PA2929
                           204
                           99.50
                           99.99
                           0
                           1003.0
     

     
     
170714
                           gb|AAG06317.1|AE004719_3
                           (AE004719) hypothetical protein PA2929 [Pseudomonas aeruginosa PAO1]
                           204
                           99.50
                           99.99
                           0
                           1003.0
     

     
     
170715
                           gb|AAN66324.1|AE016261_1
                           (AE016776) transporter, LysE family [Pseudomonas putida KT2440]
                           205
                           45.36
                           63.41
                           2
                           456.0
     

     
     
170716
                           gb|AAO54676.1|
                           (AE016859) transporter, LysE family [Pseudomonas syringae pv. tomato str. DC3000]
                           217
                           43.31
                           58.06
                           20
                           429.0
     

     
     
170717
                           gb|AAN53611.1|AE015500_10
                           (AE015500) transporter, LysE family [Shewanella oneidensis MR-1]
                           205
                           40.97
                           61.46
                           3
                           400.0
     

     






      

          
GC ORFID: 46914How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2929Glimmer Score: 

          
Start: 2670185Stop: 2669571

          
Length: 615


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2929 translation of PA2929Homolog Bit Score 390.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4324 (ORF: BLASTX 164.0), t_PA2929 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAGAGTTGCTAGCTTTCCTGACCATCACCGTGCTTGCGGTGATCAGCCCCGGCGCCGATTTCGCCATG 
GTCTCGCGCAACAGCCTGCTGTATTCCCGCCGCGCCGGCCTGCTCACCGCGCTGGGCATCGGCGCGGGGGTG 
ACGGTACATGTCGGCTACAGCATCCTCGGCGTCGGCGTGCTGGTGCGCGAGTCGCTGGCGCTGTTCACCGCG 
CTGAAGCTGGCGGGCGCCGCCTACCTGGTGTTCCTCGGCCTGCGCATGCTGCTGGCGCGAGAGGACACGGTG 
GCGGAGGAGGCGGCGGGCGGCGCCGGGGTTTCGTCCTGGGCGATGTTGCGCAGCGGCTTCCTGACCAATGCG 
CTCAATCCGAAGACCTGCCTGTTCGTGGTCAGCCTGTTCATGCAGGTGATCGATCCGCATACCGCGTTGCCG 
GCGCAACTAGGCTACGGGGCCTTCATCGCGCTCGCCCACGTGGCCTGGTTCGGCCTGGTCGCCTGCTTTCTC 
TCGAGCCCGGCGGTGCGCGGCCGGCTCCTGCGTTTCCGCCGGCGCATCGACCAGTTCTTTGGCGCCCTGCTG 
GTCGGTTTCGGCGTCCTGCTGGGGGCGAAAAGCCCATGA