ViewGene
Locus Name:
GeneID:
Location:

GeneID:3911
TrivialName: PA14_26760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26760
PAO1 Ortholog Locus:PA2885
Sequence Length:597
Protein Length:198
Start: 2331804
Stop: 2332400
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06273.1|AE004714_10 (AE004714) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 198/198 (100%), Positives = 198/198 (100%)
Sequence:
ATGCTGGAGCTGGTGGCTACCGGACAGCTCACCGATCCGGAAAGCGCCCGCGGCAAGCTGCTGCAGACTGCC
GCCCACCTGTTCCGCAGCAAAGGCTACGAACGCACCACGGTGCGCGACCTGGCCAGCGCGGTGGGCATCCAG
TCGGGCAGCATCTTCCATCACTTCAAGAGCAAGGACGAGATCCTGCGCTCGGTGATGGAAGAGACCATCCTC
TACAACACCGCCCTGATGCGCGCCGCCCTGGCCGACGCCGAGGACCTGCGCGAGCGGGTGCTGGGACTGATC
CGCTGCGAGCTGCAATCGATCATGGGCGGCACCGGCGAGGCGATGGCGGTGCTGGTCTACGAGTGGCGCTCG
CTGTCCGCCGAAGGCCAGGCGTACATCCTCGGCCTGCGCGACATCTACGAGCAGATGTGGCTCGACGTGCTG
GGGGAGGCGCGGCTGGCCGGCTACTGCCAGGGCGATCCGTTCATCCTGCGGCGCTTCCTCACCGGCGCGCTG
TCCTGGACCACCACCTGGTTCCGTCCGGAAGGACCGATGAGTCTCGACCAGCTCGCCGAGGAGGCCCTGGCG
CTGGTGATCAAGAACGCCTGA
Translation:
MLELVATGQLTDPESARGKLLQTAAHLFRSKGYERTTVRDLASAVGIQSGSIFHHFKSKDEILRSVMEETIL
YNTALMRAALADAEDLRERVLGLIRCELQSIMGGTGEAMAVLVYEWRSLSAEGQAYILGLRDIYEQMWLDVL
GEARLAGYCQGDPFILRRFLTGALSWTTTWFRPEGPMSLDQLAEEALALVIKNA*
AnnotationID:3918GeneID:3911
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 11:11:24
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2885
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK16600.1| (AF173683) putative transcriptional regulator PfI2 [Pseudomonas
           fluorescens]
          Length = 207

 Score =  314 bits (804), Expect = 2e-85
 Identities = 154/197 (78%), Positives = 179/197 (90%)








 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 57.7 bits (140), Expect = 1e-09
Identities = 19/47 (40%), Positives = 32/47 (68%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7825




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24967




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36161




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3911_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3911
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6149
                           PA2885_tr
                           translation of PA2885
                           198
                           99.99
                           99.99
                           0
                           1002.0
     

     
     
170708
                           gb|AAG06273.1|AE004714_10
                           (AE004714) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           198
                           99.99
                           99.99
                           0
                           1002.0
     

     
     
170709
                           gb|AAK16600.1|
                           (AF173683) putative transcriptional regulator PfI2 [Pseudomonas fluorescens]
                           207
                           74.39
                           86.47
                           9
                           802.0
     

     
     
170710
                           gb|AAQ59763.1|
                           (AE016917) probable transcriptional regulator, TetR family [Chromobacterium violaceum ATCC 12472]
                           205
                           41.95
                           61.46
                           8
                           408.0
     

     
     
170711
                           emb|CAE32787.1|
                           (BX640443) probable TetR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           217
                           39.63
                           55.29
                           26
                           372.0
     

     






      

          
GC ORFID: 46913How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2885Glimmer Score: 

          
Start: 2622122Stop: 2621526

          
Length: 597


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2885 translation of PA2885Homolog Bit Score 390.0

          
Other Homologs:  t_PA2885 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGGAGCTGGTGGCTACCGGACAGCTCACCGATCCGGAAAGCGCCCGCGGCAAGCTGCTGCAGACTGCC 
GCCCACCTGTTCCGCAGCAAAGGCTACGAACGCACCACGGTGCGCGACCTGGCCAGCGCGGTGGGCATCCAG 
TCGGGCAGCATCTTCCATCACTTCAAGAGCAAGGACGAGATCCTGCGCTCGGTGATGGAAGAGACCATCCTC 
TACAACACCGCCCTGATGCGCGCCGCCCTGGCCGACGCCGAGGACCTGCGCGAGCGGGTGCTGGGACTGATC 
CGCTGCGAGCTGCAATCGATCATGGGCGGCACCGGCGAGGCGATGGCGGTGCTGGTCTACGAGTGGCGCTCG 
CTGTCCGCCGAAGGCCAGGCGTACATCCTCGGCCTGCGCGACATCTACGAGCAGATGTGGCTCGACGTGCTG 
GGGGAGGCGCGGCTGGCCGGCTACTGCCAGGGCGATCCGTTCATCCTGCGGCGCTTCCTCACCGGCGCGCTG 
TCCTGGACCACCACCTGGTTCCGTCCGGAAGGACCGATGAGTCTCGACCAGCTCGCCGAGGAGGCCCTGGCG 
CTGGTGATCAAGAACGCCTGA