ViewGene
Locus Name:
GeneID:
Location:

GeneID:3910
TrivialName: PA14_40630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40630
PAO1 Ortholog Locus:PA1847
Sequence Length:585
Protein Length:194
Start: 3627012
Stop: 3626428
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05236.1|AE004611_1 (AE004611) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 194/194 (100%), Positives = 194/194 (100%)
Sequence:
ATGAGCGCCATCACCATTACCGAAGCTGCCCAAGCGTATCTGGCCGAGTTGCTGGAGAAGCAGAGCACCCCG
GGTATCGGCATTCGTATCTTCATCACCCAGCCGGGTACCCAGTACGCGGAAACCTGCATCGCCTACTGCAAG
CCGGGCGAGGAAAAGGTCGAGGACACCGCCATCGCCCTGAAGGACTTCACTGCCTGGATCGATGCGGTCAGC
GAGCCCTTCCTCGAAGACGCGGTGGTGGACTACGCCACCGACCGCATGGGCGGCCAGCTGACCATCAAGGCG
CCGAACGCCAAGGTGCCGATGGTCAACGAGGACAGCCCGATCACCGAACGCATCAACTACTACCTGCAGACC
GAGATCAATCCCGGCCTGGCCAGCCACGGCGGACAGGTGAGCCTGGTCGACGTGGTCGAGGACAACATCGCC
GTGTTGCGTTTCGGCGGTGGTTGCCAGGGCTGCGGGATGGTCGACATGACCCTCAAGGATGGCGTCGAGAAG
ACCCTGATCGAGCGTATTCCCGAACTGAAGGGCGTGCGCGACGTGACCGACCACAGCAACAAGGAGAACGCC
TACTACTGA
Translation:
MSAITITEAAQAYLAELLEKQSTPGIGIRIFITQPGTQYAETCIAYCKPGEEKVEDTAIALKDFTAWIDAVS
EPFLEDAVVDYATDRMGGQLTIKAPNAKVPMVNEDSPITERINYYLQTEINPGLASHGGQVSLVDVVEDNIA
VLRFGGGCQGCGMVDMTLKDGVEKTLIERIPELKGVRDVTDHSNKENAYY*
AnnotationID:3917GeneID:3910
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 05:05:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:yhgI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0694
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67991.1|AE016431_7 (AE016783) yhgI protein [Pseudomonas putida KT2440]
          Length = 194

 Score =  347 bits (890), Expect = 2e-95
 Identities = 167/194 (86%), Positives = 182/194 (93%)

>gb|AAO56236.1| (AE016865) yhgI protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 197

 Score =  337 bits (863), Expect = 3e-92
 Identities = 163/197 (82%), Positives = 179/197 (90%), Gaps = 3/197 (1%)

>gb|AAN82629.1|AE016768_47 (AE016768) Protein yhgI [Escherichia coli CFT073]
          Length = 191

 Score =  216 bits (551), Expect = 5e-56
 Identities = 100/191 (52%), Positives = 140/191 (73%), Gaps = 1/191 (0%)






 
Structural Features:
COG0694, COG0694, Thioredoxin-like proteins and domains 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 93 residues,  97.8% aligned
Score =  106 bits (265), Expect = 2e-24
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 1/91 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7823




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24965




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37074




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3910_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3910
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6148
                           PA1847_tr
                           translation of PA1847
                           194
                           99.99
                           99.99
                           0
                           1003.0
     

     
     
170679
                           gb|AAG05236.1|AE004611_1
                           (AE004611) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           194
                           99.99
                           99.99
                           0
                           1003.0
     

     
     
170680
                           gb|AAN67991.1|AE016431_7
                           (AE016783) yhgI protein [Pseudomonas putida KT2440]
                           194
                           86.08
                           93.81
                           0
                           890.0
     

     
     
170681
                           gb|AAO56236.1|
                           (AE016865) yhgI protein [Pseudomonas syringae pv. tomato str. DC3000]
                           197
                           82.74
                           90.86
                           3
                           866.0
     

     
     
170689
                           dbj|BAB37679.1|
                           (AP002565) hypothetical protein [Escherichia coli O157:H7]
                           194
                           51.54
                           72.16
                           3
                           552.0
     

     






      

          
GC ORFID: 46912How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1847Glimmer Score: 

          
Start: 1326898Stop: 1327482

          
Length: 585


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1847 translation of PA1847Homolog Bit Score 390.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8116 (ORF: BLASTX 337.0), t_PA1847 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCATCACCATTACCGAAGCTGCCCAAGCGTATCTGGCCGAGTTGCTGGAGAAGCAGAGCACCCCG 
GGTATCGGCATTCGTATCTTCATCACCCAGCCGGGTACCCAGTACGCGGAAACCTGCATCGCCTACTGCAAG 
CCGGGCGAGGAAAAGGTCGAGGACACCGCCATCGCCCTGAAGGACTTCACTGCCTGGATCGATGCGGTCAGC 
GAGCCCTTCCTCGAAGACGCGGTGGTGGACTACGCCACCGACCGCATGGGCGGCCAGCTGACCATCAAGGCG 
CCGAACGCCAAGGTGCCGATGGTCAACGAGGACAGCCCGATCACCGAACGCATCAACTACTACCTGCAGACC 
GAGATCAATCCCGGCCTGGCCAGCCACGGCGGACAGGTGAGCCTGGTCGACGTGGTCGAGGACAACATCGCC 
GTGTTGCGTTTCGGCGGTGGTTGCCAGGGCTGCGGGATGGTCGACATGACCCTCAAGGATGGCGTCGAGAAG 
ACCCTGATCGAGCGTATTCCCGAACTGAAGGGCGTGCGCGACGTGACCGACCACAGCAACAAGGAGAACGCC 
TACTACTGA