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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05778.1|AE004665_5 (AE004665) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 661/663 (99%), Positives = 661/663 (99%)
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Sequence:
ATGGAAAACGCCACGCACCCCGTCCCCCTGATCGAACTGCGCGACATCCGCAAGCGCTACGGCGGCAATGGC
ACCCCGGAAGTCGAGGTACTCAAGGGCGTATCGCTGTCGATCCACGCCGGCGAGTTCGTCGCCATCGTCGGC
GCCTCCGGCTCCGGCAAGTCGACCCTGATGAACATCCTCGGCTGCCTCGACCGGCCCAGCTCCGGCAGCTAC
CACTTCGCCGGCCACGACGTCGCCGAACTGGACAGCGACGAGCAGGCCTGGCTGCGCCGCGAGGCATTCGGC
TTCGTGTTCCAGGGCTATCACCTGATCCCCTCCGCCTCGGCCCAGGAAAACGTCGAGATGCCGGCGATCTAC
GCCGGCATCCCGGCGAGCGAGCGGCACACCCGCGCGCGGGCCCTGCTCGAACGCCTGGGCCTGGCCGAGCGC
ACCGCCAACCGTCCGCACCAGTTGTCCGGCGGCCAGCAGCAGCGGGTGTCGATCGCCCGCGCGCTGATGAAC
GGCGGCCATATCATCCTCGCCGACGAACCCACCGGCGCCCTCGACAGCCACAGCGGCGCGGAAGTCATGGCG
CTGCTCGACGAGCTGGCCAGCCAGGGCCACGTGGTGATCCTGATCACCCACGACCGCGACGTCGCCGCCCGC
GCCAAGCGCATCATCGAGGTGCGCGACGGCGAGATCGTCAGCGACAGCGCCAACGACGAGCGCCCGGCGCAA
CCGAGCGCCGGCGTCGAGCGCCACCTGCAGGCCGACGATCTCAGCCAGCGCCTCGCCGAGGGCAGCAGCGAA
CCCTCGGGGGCCTGGCGCGCCGAACTGCTGGAGGCGGTGCGCGCCGCCTGGCGGGTGATGTGGATCAATCGG
TTCCGCACCGCGCTGACCCTGCTCGGGATCATCATCGGCGTCGCCTCGGTGGTGGTCATGCTCGCCGTCGGC
GAGGGCAGCAAACGCCAGGTGATGGCGCAGATGGGCGCGTTCGGCTCGAACATCATCTATCTCAGCGGCTAC
TCGCCGAACCCGCGCGCGCCGATGGGCATCGTCAGCAGCGACGACGTCGCCGCCATCGCCACCCTGCCCCAG
GTGAAGAAGGTCATGCCGGTGAACGGCGGCGAGCTGGTGGTGCGCTACGGCAACATCGACTACCACGCCTAC
GTCGGCGGCAACAACACCGACTTCCCGGAAATCCTCAACTGGCCGGTGGCCGAGGGCAGCTACTTCACCGAG
CGCGACGAAGACGCCGCCACCACGGTCGCGGTGATCGGCTACAAGGTGCGCAAGAAGCTGTTCGGCAGCGCC
AACCCGATCGGCCGCTACATCCTCATCGAGAACGTGCCGTTCCAGGTCATCGGCGTGCTCGCCGAGAAAGGC
TCCAGCTCCGGCGACAAGGATGCCGACAACCGCATCGCCATCCCCTACTCCGCTGCCAGCATCCGCCTGTTC
GGCACGCGCAACCCCGAGTACGTGATCATCGCCGCCGCCGACGCCCAGCGCGTGCACCAGGCCGAACGCGCC
ATCGACCAGTTGATGCTGCGCCTGCACCGCGGCCAGCGCGACTACGAGCTGACCAACAACGCGGCGATGATC
CAGGCCGAGGCGAAGACCCAGAACACCCTGTCGCTGATGCTCGGCTCGATCGCCGCGATCTCCCTGCTGGTG
GGCGGGATCGGCGTGATGAACATCATGCTCATGACCGTGCGTGAACGCACTCGCGAGATCGGCATCCGCATG
GCCACCGGCGCCCGCCAGGGCGATATCCTCCGCCAGTTCCTCACCGAAGCGGCGATGCTCTCGGTGGTCGGC
GGCCTGGCCGGGATCGCCCTGGCCCTGTGCATCGGCGGCGTGCTGCTGCTCGGCCAGGTCGCGGTGGCCTTT
TCCCTGTCGGCCATCGTCGGCGCCTTCAGTTGCGCGCTGGTCACCGGCCTGGTGTTCGGCTTCATGCCGGCG
CGCAAGGCCGCCCAGCTGGACCCGGTGGCCGCCCTGGCCAGCCAATGA |
Translation:
MENATHPVPLIELRDIRKRYGGNGTPEVEVLKGVSLSIHAGEFVAIVGASGSGKSTLMNILGCLDRPSSGSY
HFAGHDVAELDSDEQAWLRREAFGFVFQGYHLIPSASAQENVEMPAIYAGIPASERHTRARALLERLGLAER
TANRPHQLSGGQQQRVSIARALMNGGHIILADEPTGALDSHSGAEVMALLDELASQGHVVILITHDRDVAAR
AKRIIEVRDGEIVSDSANDERPAQPSAGVERHLQADDLSQRLAEGSSEPSGAWRAELLEAVRAAWRVMWINR
FRTALTLLGIIIGVASVVVMLAVGEGSKRQVMAQMGAFGSNIIYLSGYSPNPRAPMGIVSSDDVAAIATLPQ
VKKVMPVNGGELVVRYGNIDYHAYVGGNNTDFPEILNWPVAEGSYFTERDEDAATTVAVIGYKVRKKLFGSA
NPIGRYILIENVPFQVIGVLAEKGSSSGDKDADNRIAIPYSAASIRLFGTRNPEYVIIAAADAQRVHQAERA
IDQLMLRLHRGQRDYELTNNAAMIQAEAKTQNTLSLMLGSIAAISLLVGGIGVMNIMLMTVRERTREIGIRM
ATGARQGDILRQFLTEAAMLSVVGGLAGIALALCIGGVLLLGQVAVAFSLSAIVGAFSCALVTGLVFGFMPA
RKAAQLDPVAALASQ* |
AnnotationID:400 | GeneID:391 |
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Modification Date/Time: |
2005-03-06 08:08:40 |
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GeneProduct: | putative ATP-binding/permease fusion ABC transporter |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (27) Transport of small molecules |
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Alternate Gene Product Name: | putative ABC export system, permease/ATP-binding protein |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | adaptation, protection |
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Homology: | >gb|AAO55676.1| (AE016863) macrolide ABC efflux protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 656
Score = 990 bits (2560), Expect = 0.0
Identities = 507/659 (76%), Positives = 574/659 (87%), Gaps = 10/659 (1%)
>emb|CAD84992.1| (BX321859) probable ATP-binding/permease fusion ABC transporter
[Nitrosomonas europaea ATCC 19718]
Length = 659
Score = 738 bits (1906), Expect = 0.0
Identities = 373/659 (56%), Positives = 499/659 (75%), Gaps = 11/659 (1%)
>gb|AAM86364.1|AE013884_11 (AE013884) putative ATP-binding component of ABC transport system
[Yersinia pestis KIM]
Length = 649
Score = 537 bits (1384), Expect = e-152
Identities = 308/660 (46%), Positives = 425/660 (64%), Gaps = 20/660 (3%)
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Structural Features: | COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component
[Defense mechanisms]
CD-Length = 226 residues, 100.0% aligned
Score = 295 bits (756), Expect = 1e-80
Identities = 118/227 (51%), Positives = 156/227 (68%), Gaps = 3/227 (1%)
COG4181, COG4181, Predicted ABC-type transport system involved
in lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 228 residues, 97.8% aligned
Score = 218 bits (556), Expect = 2e-57
Identities = 101/224 (45%), Positives = 140/224 (62%), Gaps = 2/224 (0%)
COG1126, GlnQ, ABC-type polar amino acid transport system,
ATPase component
[Amino acid transport and metabolism]
CD-Length = 240 residues, 94.6% aligned
Score = 206 bits (527), Expect = 5e-54
Identities = 96/235 (40%), Positives = 137/235 (58%), Gaps = 10/235 (4%) |
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