ViewGene

Locus Name:
GeneID:
Location:

GeneID:391
TrivialName: PA14_33760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33760
PAO1 Ortholog Locus:PA2390
Sequence Length:1992
Protein Length:663
Start: 3000487
Stop: 2998496
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05778.1|AE004665_5 (AE004665) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 661/663 (99%), Positives = 661/663 (99%)
Sequence:
ATGGAAAACGCCACGCACCCCGTCCCCCTGATCGAACTGCGCGACATCCGCAAGCGCTACGGCGGCAATGGC
ACCCCGGAAGTCGAGGTACTCAAGGGCGTATCGCTGTCGATCCACGCCGGCGAGTTCGTCGCCATCGTCGGC
GCCTCCGGCTCCGGCAAGTCGACCCTGATGAACATCCTCGGCTGCCTCGACCGGCCCAGCTCCGGCAGCTAC
CACTTCGCCGGCCACGACGTCGCCGAACTGGACAGCGACGAGCAGGCCTGGCTGCGCCGCGAGGCATTCGGC
TTCGTGTTCCAGGGCTATCACCTGATCCCCTCCGCCTCGGCCCAGGAAAACGTCGAGATGCCGGCGATCTAC
GCCGGCATCCCGGCGAGCGAGCGGCACACCCGCGCGCGGGCCCTGCTCGAACGCCTGGGCCTGGCCGAGCGC
ACCGCCAACCGTCCGCACCAGTTGTCCGGCGGCCAGCAGCAGCGGGTGTCGATCGCCCGCGCGCTGATGAAC
GGCGGCCATATCATCCTCGCCGACGAACCCACCGGCGCCCTCGACAGCCACAGCGGCGCGGAAGTCATGGCG
CTGCTCGACGAGCTGGCCAGCCAGGGCCACGTGGTGATCCTGATCACCCACGACCGCGACGTCGCCGCCCGC
GCCAAGCGCATCATCGAGGTGCGCGACGGCGAGATCGTCAGCGACAGCGCCAACGACGAGCGCCCGGCGCAA
CCGAGCGCCGGCGTCGAGCGCCACCTGCAGGCCGACGATCTCAGCCAGCGCCTCGCCGAGGGCAGCAGCGAA
CCCTCGGGGGCCTGGCGCGCCGAACTGCTGGAGGCGGTGCGCGCCGCCTGGCGGGTGATGTGGATCAATCGG
TTCCGCACCGCGCTGACCCTGCTCGGGATCATCATCGGCGTCGCCTCGGTGGTGGTCATGCTCGCCGTCGGC
GAGGGCAGCAAACGCCAGGTGATGGCGCAGATGGGCGCGTTCGGCTCGAACATCATCTATCTCAGCGGCTAC
TCGCCGAACCCGCGCGCGCCGATGGGCATCGTCAGCAGCGACGACGTCGCCGCCATCGCCACCCTGCCCCAG
GTGAAGAAGGTCATGCCGGTGAACGGCGGCGAGCTGGTGGTGCGCTACGGCAACATCGACTACCACGCCTAC
GTCGGCGGCAACAACACCGACTTCCCGGAAATCCTCAACTGGCCGGTGGCCGAGGGCAGCTACTTCACCGAG
CGCGACGAAGACGCCGCCACCACGGTCGCGGTGATCGGCTACAAGGTGCGCAAGAAGCTGTTCGGCAGCGCC
AACCCGATCGGCCGCTACATCCTCATCGAGAACGTGCCGTTCCAGGTCATCGGCGTGCTCGCCGAGAAAGGC
TCCAGCTCCGGCGACAAGGATGCCGACAACCGCATCGCCATCCCCTACTCCGCTGCCAGCATCCGCCTGTTC
GGCACGCGCAACCCCGAGTACGTGATCATCGCCGCCGCCGACGCCCAGCGCGTGCACCAGGCCGAACGCGCC
ATCGACCAGTTGATGCTGCGCCTGCACCGCGGCCAGCGCGACTACGAGCTGACCAACAACGCGGCGATGATC
CAGGCCGAGGCGAAGACCCAGAACACCCTGTCGCTGATGCTCGGCTCGATCGCCGCGATCTCCCTGCTGGTG
GGCGGGATCGGCGTGATGAACATCATGCTCATGACCGTGCGTGAACGCACTCGCGAGATCGGCATCCGCATG
GCCACCGGCGCCCGCCAGGGCGATATCCTCCGCCAGTTCCTCACCGAAGCGGCGATGCTCTCGGTGGTCGGC
GGCCTGGCCGGGATCGCCCTGGCCCTGTGCATCGGCGGCGTGCTGCTGCTCGGCCAGGTCGCGGTGGCCTTT
TCCCTGTCGGCCATCGTCGGCGCCTTCAGTTGCGCGCTGGTCACCGGCCTGGTGTTCGGCTTCATGCCGGCG
CGCAAGGCCGCCCAGCTGGACCCGGTGGCCGCCCTGGCCAGCCAATGA
Translation:
MENATHPVPLIELRDIRKRYGGNGTPEVEVLKGVSLSIHAGEFVAIVGASGSGKSTLMNILGCLDRPSSGSY
HFAGHDVAELDSDEQAWLRREAFGFVFQGYHLIPSASAQENVEMPAIYAGIPASERHTRARALLERLGLAER
TANRPHQLSGGQQQRVSIARALMNGGHIILADEPTGALDSHSGAEVMALLDELASQGHVVILITHDRDVAAR
AKRIIEVRDGEIVSDSANDERPAQPSAGVERHLQADDLSQRLAEGSSEPSGAWRAELLEAVRAAWRVMWINR
FRTALTLLGIIIGVASVVVMLAVGEGSKRQVMAQMGAFGSNIIYLSGYSPNPRAPMGIVSSDDVAAIATLPQ
VKKVMPVNGGELVVRYGNIDYHAYVGGNNTDFPEILNWPVAEGSYFTERDEDAATTVAVIGYKVRKKLFGSA
NPIGRYILIENVPFQVIGVLAEKGSSSGDKDADNRIAIPYSAASIRLFGTRNPEYVIIAAADAQRVHQAERA
IDQLMLRLHRGQRDYELTNNAAMIQAEAKTQNTLSLMLGSIAAISLLVGGIGVMNIMLMTVRERTREIGIRM
ATGARQGDILRQFLTEAAMLSVVGGLAGIALALCIGGVLLLGQVAVAFSLSAIVGAFSCALVTGLVFGFMPA
RKAAQLDPVAALASQ*
AnnotationID:400GeneID:391
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 08:08:40
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding/permease fusion ABC transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ABC export system, permease/ATP-binding protein
Functional Category Confidence Code:5
COGs:COG1136,COG4181,COG1126
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55676.1| (AE016863) macrolide ABC efflux protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 656

 Score =  990 bits (2560), Expect = 0.0
 Identities = 507/659 (76%), Positives = 574/659 (87%), Gaps = 10/659 (1%)

>emb|CAD84992.1| (BX321859) probable ATP-binding/permease fusion ABC transporter
           [Nitrosomonas europaea ATCC 19718]
          Length = 659

 Score =  738 bits (1906), Expect = 0.0
 Identities = 373/659 (56%), Positives = 499/659 (75%), Gaps = 11/659 (1%)

>gb|AAM86364.1|AE013884_11 (AE013884) putative ATP-binding component of ABC transport system
           [Yersinia pestis KIM]
          Length = 649

 Score =  537 bits (1384), Expect = e-152
 Identities = 308/660 (46%), Positives = 425/660 (64%), Gaps = 20/660 (3%)

Structural Features:
COG1136, SalX, ABC-type antimicrobial peptide transport system, 
ATPase component 
[Defense mechanisms]
CD-Length = 226 residues, 100.0% aligned
Score =  295 bits (756), Expect = 1e-80
Identities = 118/227 (51%), Positives = 156/227 (68%), Gaps = 3/227 (1%)

COG4181, COG4181, Predicted ABC-type transport system involved 
in lysophospholipase L1 biosynthesis, ATPase component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 228 residues,  97.8% aligned
Score =  218 bits (556), Expect = 2e-57
Identities = 101/224 (45%), Positives = 140/224 (62%), Gaps = 2/224 (0%)

COG1126, GlnQ, ABC-type polar amino acid transport system, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  94.6% aligned
Score =  206 bits (527), Expect = 5e-54
Identities = 96/235 (40%), Positives = 137/235 (58%), Gaps = 10/235 (4%)
Genomic Context:
Comment:
ReferenceID:785
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17927
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32941
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:391_cdd.html
URL:
Homologs By Global Alignment
Gene ID:391

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
656 PA2390_tr translation of PA2390 663 99.69 99.69 0 3304.0
29977 gb|AAG05778.1|AE004665_5 (AE004665) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1] 663 99.69 99.69 0 3304.0
29978 gb|AAO55676.1| (AE016863) macrolide ABC efflux protein [Pseudomonas syringae pv. tomato str. DC3000] 667 76.16 86.20 15 2568.0
29979 gb|AAN69791.1|AE016615_7 (AE016789) ABC export system, permease/ATP-binding protein, putative [Pseudomonas putida KT2440] 664 73.64 84.78 11 2464.0
29980 emb|CAD84992.1| (BX321859) probable ATP-binding/permease fusion ABC transporter [Nitrosomonas europaea ATCC 19718] 667 56.22 75.26 12 1917.0
GC ORFID: 43393How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2390Glimmer Score:
Start: 1953429Stop: 1955420
Length: 1992
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2390 translation of PA2390Homolog Bit Score 1277.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene462 (ORF: BLASTX 985.0), psyr_15may02_Scaffold7_revised_gene7313 (ORF: BLASTX 197.0), t_PA2390 (ORF: GLIMMER)
GC ORF Sequence
ATGGAAAACGCCACGCACCCCGTCCCCCTGATCGAACTGCGCGACATCCGCAAGCGCTACGGCGGCAATGGC
ACCCCGGAAGTCGAGGTACTCAAGGGCGTATCGCTGTCGATCCACGCCGGCGAGTTCGTCGCCATCGTCGGC
GCCTCCGGCTCCGGCAAGTCGACCCTGATGAACATCCTCGGCTGCCTCGACCGGCCCAGCTCCGGCAGCTAC
CACTTCGCCGGCCACGACGTCGCCGAACTGGACAGCGACGAGCAGGCCTGGCTGCGCCGCGAGGCATTCGGC
TTCGTGTTCCAGGGCTATCACCTGATCCCCTCCGCCTCGGCCCAGGAAAACGTCGAGATGCCGGCGATCTAC
GCCGGCATCCCGGCGAGCGAGCGGCACACCCGCGCGCGGGCCCTGCTCGAACGCCTGGGCCTGGCCGAGCGC
ACCGCCAACCGTCCGCACCAGTTGTCCGGCGGCCAGCAGCAGCGGGTGTCGATCGCCCGCGCGCTGATGAAC
GGCGGCCATATCATCCTCGCCGACGAACCCACCGGCGCCCTCGACAGCCACAGCGGCGCGGAAGTCATGGCG
CTGCTCGACGAGCTGGCCAGCCAGGGCCACGTGGTGATCCTGATCACCCACGACCGCGACGTCGCCGCCCGC
GCCAAGCGCATCATCGAGGTGCGCGACGGCGAGATCGTCAGCGACAGCGCCAACGACGAGCGCCCGGCGCAA
CCGAGCGCCGGCGTCGAGCGCCACCTGCAGGCCGACGATCTCAGCCAGCGCCTCGCCGAGGGCAGCAGCGAA
CCCTCGGGGGCCTGGCGCGCCGAACTGCTGGAGGCGGTGCGCGCCGCCTGGCGGGTGATGTGGATCAATCGG
TTCCGCACCGCGCTGACCCTGCTCGGGATCATCATCGGCGTCGCCTCGGTGGTGGTCATGCTCGCCGTCGGC
GAGGGCAGCAAACGCCAGGTGATGGCGCAGATGGGCGCGTTCGGCTCGAACATCATCTATCTCAGCGGCTAC
TCGCCGAACCCGCGCGCGCCGATGGGCATCGTCAGCAGCGACGACGTCGCCGCCATCGCCACCCTGCCCCAG
GTGAAGAAGGTCATGCCGGTGAACGGCGGCGAGCTGGTGGTGCGCTACGGCAACATCGACTACCACGCCTAC
GTCGGCGGCAACAACACCGACTTCCCGGAAATCCTCAACTGGCCGGTGGCCGAGGGCAGCTACTTCACCGAG
CGCGACGAAGACGCCGCCACCACGGTCGCGGTGATCGGCTACAAGGTGCGCAAGAAGCTGTTCGGCAGCGCC
AACCCGATCGGCCGCTACATCCTCATCGAGAACGTGCCGTTCCAGGTCATCGGCGTGCTCGCCGAGAAAGGC
TCCAGCTCCGGCGACAAGGATGCCGACAACCGCATCGCCATCCCCTACTCCGCTGCCAGCATCCGCCTGTTC
GGCACGCGCAACCCCGAGTACGTGATCATCGCCGCCGCCGACGCCCAGCGCGTGCACCAGGCCGAACGCGCC
ATCGACCAGTTGATGCTGCGCCTGCACCGCGGCCAGCGCGACTACGAGCTGACCAACAACGCGGCGATGATC
CAGGCCGAGGCGAAGACCCAGAACACCCTGTCGCTGATGCTCGGCTCGATCGCCGCGATCTCCCTGCTGGTG
GGCGGGATCGGCGTGATGAACATCATGCTCATGACCGTGCGTGAACGCACTCGCGAGATCGGCATCCGCATG
GCCACCGGCGCCCGCCAGGGCGATATCCTCCGCCAGTTCCTCACCGAAGCGGCGATGCTCTCGGTGGTCGGC
GGCCTGGCCGGGATCGCCCTGGCCCTGTGCATCGGCGGCGTGCTGCTGCTCGGCCAGGTCGCGGTGGCCTTT
TCCCTGTCGGCCATCGTCGGCGCCTTCAGTTGCGCGCTGGTCACCGGCCTGGTGTTCGGCTTCATGCCGGCG
CGCAAGGCCGCCCAGCTGGACCCGGTGGCCGCCCTGGCCAGCCAATGA