ViewGene
Locus Name:
GeneID:
Location:

GeneID:3909
TrivialName: PA14_70970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70970
PAO1 Ortholog Locus:PA5374
Sequence Length:594
Protein Length:197
Start: 6324230
Stop: 6323637
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08759.1|AE004950_2 (AE004950) transcriptional regulator BetI [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGCCCAAGGTCGGTATGCAGCCCATCCGCCGCTCGCAACTGATTCACGCCACCCTGGAGGCGGTCGATCAG
GTCGGCATGGGAGACGCCAGCATCGCCCTGATTGCCCGCCTGGCGGGTGTTTCCAACGGCATCATCAGCCAC
TACTTCCAGGACAAGAACGGCTTGCTGGAAGCGACCATGCGGCACCTGCTCAGCGCCTTGAGCAAGGCCGTA
CGCGAACGCCGCGCGGCGCTCTACGACGACAGTCCGAGGGCGCACCTGCGAGCGATCGTCGAAGGCAACTTC
GACGACAGCCAGGTCAATGGTCCGGCGATGAAGACCTGGCTGGCGTTCTGGGCGACCagCATGCACCAGCCG
GCACTGCGTCGATTGCAGCGGGTCAACGACCAtCGCCTGTATTCGAACCTGTGCTACCAGTTCCGCCGCCAG
CTCTCGGCGGACGACGCCCGCGCCGCGGCACGCGGCCTGGCGGCCCTGATCGACGGCCTGTGGTTGCGTGGC
GCGCTGACCGGCGACGCCTTCGATACCGACGAGGCCTTGAACATCGCTTACGACTACCTCGACCAGCAGTTG
GCAAAACAGTCGGGGTAG
Translation:
MPKVGMQPIRRSQLIHATLEAVDQVGMGDASIALIARLAGVSNGIISHYFQDKNGLLEATMRHLLSALSKAV
RERRAALYDDSPRAHLRAIVEGNFDDSQVNGPAMKTWLAFWATSMHQPALRRLQRVNDHRLYSNLCYQFRRQ
LSADDARAAARGLAALIDGLWLRGALTGDAFDTDEALNIAYDYLDQQLAKQSG*
AnnotationID:3916GeneID:3909
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:03
Gene Name:betI
Confidence Code:2
GeneProduct:TetR-family regulatory protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309,pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  87.6% aligned
Score = 54.3 bits (128), Expect = 8e-09

pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues,  97.9% aligned
Score = 43.8 bits (104), Expect = 2e-05
Identities = 16/46 (34%), Positives = 24/46 (52%)









   
Genomic Context:






   
Comment:


















    ReferenceID:7821




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24963




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34713




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Blast (text/plain)







    
Data:3909_cdd.html


    		




 
URL:

















    ReferenceID:35663




  
Author/Investigator(s):
        Canovas D, Vargas C, Kneip S, Moron MJ, Ventosa A, Bremer E, Nieto JJ.





  
Title:
        Genes for the synthesis of the osmoprotectant glycine betaine from choline in the moderately halophilic bacterium Halomonas elongata DSM 3043, USA.




  
PubMed:
        10708384


MedLine:
        




    
Source:
Microbiology. 2000 Feb;146 ( Pt 2):455-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10708384









           
Homologs By Global Alignment 

           

       



     
Gene ID:3909
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6147
                           PA5374_tr
                           translation of PA5374
                           197
                           99.99
                           99.99
                           0
                           1005.0
     

     
     
170665
                           gb|AAG08759.1|AE004950_2
                           (AE004950) transcriptional regulator BetI [Pseudomonas aeruginosa PAO1]
                           197
                           99.99
                           99.99
                           0
                           1005.0
     

     
     
170666
                           gb|AAO53984.1|
                           (AE016857) regulatory protein BetI [Pseudomonas syringae pv. tomato str. DC3000]
                           197
                           79.69
                           88.32
                           0
                           812.0
     

     
     
170668
                           emb|CAC90008.1|
                           (AJ414146) TetR-family regulatory protein [Yersinia pestis CO92]
                           198
                           64.64
                           79.79
                           1
                           649.0
     

     
     
170667
                           emb|CAB77174.1|
                           (AJ238780) BetI protein [Halomonas elongata]
                           207
                           62.31
                           74.39
                           10
                           653.0
     

     






      

          
GC ORFID: 46911How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5374Glimmer Score: 

          
Start: 5587919Stop: 5587326

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5374 translation of PA5374Homolog Bit Score 391.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6624 (ORF: BLASTX 318.0), t_PA5374 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAAGGTCGGTATGCAGCCCATCCGCCGCTCGCAACTGATTCACGCCACCCTGGAGGCGGTCGATCAG 
GTCGGCATGGGAGACGCCAGCATCGCCCTGATTGCCCGCCTGGCGGGTGTTTCCAACGGCATCATCAGCCAC 
TACTTCCAGGACAAGAACGGCTTGCTGGAAGCGACCATGCGGCACCTGCTCAGCGCCTTGAGCAAGGCCGTA 
CGCGAACGCCGCGCGGCGCTCTACGACGACAGTCCGAGGGCGCACCTGCGAGCGATCGTCGAAGGCAACTTC 
GACGACAGCCAGGTCAATGGTCCGGCGATGAAGACCTGGCTGGCGTTCTGGGCGACCagCATGCACCAGCCG 
GCACTGCGTCGATTGCAGCGGGTCAACGACCAtCGCCTGTATTCGAACCTGTGCTACCAGTTCCGCCGCCAG 
CTCTCGGCGGACGACGCCCGCGCCGCGGCACGCGGCCTGGCGGCCCTGATCGACGGCCTGTGGTTGCGTGGC 
GCGCTGACCGGCGACGCCTTCGATACCGACGAGGCCTTGAACATCGCTTACGACTACCTCGACCAGCAGTTG 
GCAAAACAGTCGGGGTAG