ViewGene
Locus Name:
GeneID:
Location:

GeneID:3906
TrivialName: PA14_21710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21710
PAO1 Ortholog Locus:PA3270
Sequence Length:588
Protein Length:195
Start: 1887467
Stop: 1888054
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06658.1|AE004749_7 (AE004749) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 195/195 (100%), Positives = 195/195 (100%)
Sequence:
ATGTCGAGGAGGGCGCCCATGTTCAAGCCGCTACCGATCACCCTGCAGCGCGGAGCCTTGCGTCTCGAGCCG
CTGGTGGAAGCGGACATTCCCGAGCTGGTGAGCCTTGCCGAAGCCAACCGCGAGGCGCTGCAGTACATGGAC
GGACCGACGCGGCCGGACTGGTACCGCCAGAGCCTCGCCGAGCAGCGCGAGGGCAGGGCGTTGCCGCTCGCC
GTCCGCCTCGGCGTGCAACTGGTCGGGACCACGCGCTTCGCCGAATTCCTTCCCGCCTTGCCGGCCTGCGAG
ATCGGCTGGACCTGGCTCGACCAGGCCCAGCACGGCAGCGGCCTGAACCGCATGATCAAGTACCTGATGCTC
AAGCATGCCTTCGACAACCTGCGCATGGTCCGCGTGCAGCTCAGCACGGCGGCGAGCAACCTGCGCGCCCAG
GGCGCCATCGACAAGCTCGGCGCGCAGCGCGAGGGCGTGCTGCGCAACCACCGGCGGCTGGCCGGCGGGCGG
CTAGACGACACCTTCGTCTACAGCATCACCGACCACGAATGGCCGCAGGTCAAGGCGGCGCTGGAAGCCAGC
TTCACCGGCTGA
Translation:
MSRRAPMFKPLPITLQRGALRLEPLVEADIPELVSLAEANREALQYMDGPTRPDWYRQSLAEQREGRALPLA
VRLGVQLVGTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQ
GAIDKLGAQREGVLRNHRRLAGGRLDDTFVYSITDHEWPQVKAALEASFTG*
AnnotationID:3913GeneID:3906
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 18:06:03
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA3270
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1670
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF10183.1|AE001918_8 (AE001918) acetyltransferase, putative [Deinococcus radiodurans]
          Length = 188

 Score =  155 bits (393), Expect = 1e-37
 Identities = 81/181 (44%), Positives = 117/181 (64%), Gaps = 4/181 (2%)

>gb|AAP10022.1| (AE017008) Acetyltransferase [Bacillus cereus ATCC 14579]
          Length = 195

 Score =  106 bits (264), Expect = 9e-23
 Identities = 68/186 (36%), Positives = 98/186 (52%), Gaps = 9/186 (4%)







 
Structural Features:
COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins 
[Translation, ribosomal structure and biogenesis]
CD-Length = 187 residues,  94.7% aligned
Score = 83.9 bits (206), Expect = 1e-17
Identities = 43/179 (24%), Positives = 68/179 (37%), Gaps = 14/179 (7%)









   
Genomic Context:






   
Comment:


















    ReferenceID:7815




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24957




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32273




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3906_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3906
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6144
                           PA3270_tr
                           translation of PA3270
                           195
                           99.99
                           99.99
                           0
                           1005.0
     

     
     
170554
                           gb|AAG06658.1|AE004749_7
                           (AE004749) hypothetical protein PA3270 [Pseudomonas aeruginosa PAO1]
                           195
                           99.99
                           99.99
                           0
                           1005.0
     

     
     
170555
                           gb|AAF10183.1|AE001918_8
                           (AE001918) acetyltransferase, putative [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           201
                           40.79
                           58.70
                           19
                           387.0
     

     






      

          
GC ORFID: 46908How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3270Glimmer Score: 

          
Start: 3066464Stop: 3065877

          
Length: 588


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3270 translation of PA3270Homolog Bit Score 391.0

          
Other Homologs:  t_PA3270 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGAGGAGGGCGCCCATGTTCAAGCCGCTACCGATCACCCTGCAGCGCGGAGCCTTGCGTCTCGAGCCG 
CTGGTGGAAGCGGACATTCCCGAGCTGGTGAGCCTTGCCGAAGCCAACCGCGAGGCGCTGCAGTACATGGAC 
GGACCGACGCGGCCGGACTGGTACCGCCAGAGCCTCGCCGAGCAGCGCGAGGGCAGGGCGTTGCCGCTCGCC 
GTCCGCCTCGGCGTGCAACTGGTCGGGACCACGCGCTTCGCCGAATTCCTTCCCGCCTTGCCGGCCTGCGAG 
ATCGGCTGGACCTGGCTCGACCAGGCCCAGCACGGCAGCGGCCTGAACCGCATGATCAAGTACCTGATGCTC 
AAGCATGCCTTCGACAACCTGCGCATGGTCCGCGTGCAGCTCAGCACGGCGGCGAGCAACCTGCGCGCCCAG 
GGCGCCATCGACAAGCTCGGCGCGCAGCGCGAGGGCGTGCTGCGCAACCACCGGCGGCTGGCCGGCGGGCGG 
CTAGACGACACCTTCGTCTACAGCATCACCGACCACGAATGGCCGCAGGTCAAGGCGGCGCTGGAAGCCAGC 
TTCACCGGCTGA