ViewGene
Locus Name:
GeneID:
Location:

GeneID:3905
TrivialName: PA14_70360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70360
PAO1 Ortholog Locus:PA5330
Sequence Length:618
Protein Length:205
Start: 6274297
Stop: 6273680
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08715.1|AE004945_9 (AE004945) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 204/205 (99%), Positives = 205/205 (100%)
Sequence:
ATGGTCGGACAGGATGTAATGCGTTGCCTGATGGCCCTGGGGCTGGTGCTCCAGGGGCTTTCCTTCGGCGCC
CAGGCGGCGCCGGGCGGAGCGGTGGAGCTTTACCGCTACGTCAACGACAAGGGCGTGGTGGTGCTCGACCGC
CAGGGTGTGCCGCCGCAGTACATCGGCAAGGGCTACCAGGTCCTCAACGACCAGGGCCGGGTGATCCGCACC
GTACCGCCGGCGCCGACCGCCGAGGAGCTGCGGCAGCGCAAGGCGGCCCAGGCCCAGGCCAGTTCCGATGCG
CAGTTGCTGCGCCTGTATTCCAGCCTCGAGGACGTCGACCGCGCTCGCGAACGGCGCCTGGCGGAACTGGAC
GGGCTGAGCAGCGTGGCGCGCGGCAACCTGCAGTCGCTCAAGCTGCAACAGGCCAACCTGCAAGGCCAGGCG
GCCAACCAGGAGCGTGCCGGACGTCCGGTGGCGCAGGCGCTGGTGGACCAGCTGGACGATCTCAAGCAGGAG
GAAAAGCGCCTGCAGGGTGAGATCGGGCGCTTCCAGAAGGCCCGCGAAGAGGCGGAAAGAACCTATGCCGCC
GACCGCGCGCGGCTCTCCCAGCTACTCGGCGTGAGTCCCTGA
Translation:
MVGQDVMRCLMALGLVLQGLSFGAQAAPGGAVELYRYVNDKGVVVLDRQGVPPQYIGKGYQVLNDQGRVIRT
VPPAPTAEELRQRKAAQAQASSDAQLLRLYSSLEDVDRARERRLAELDGLSSVARGNLQSLKLQQANLQGQA
ANQERAGRPVAQALVDQLDDLKQEEKRLQGEIGRFQKAREEAERTYAADRARLSQLLGVSP*
AnnotationID:3912GeneID:3905
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 18:06:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5330
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7813




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24955




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3905
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6143
                           PA5330_tr
                           translation of PA5330
                           205
                           99.51
                           99.99
                           0
                           1008.0
     

     
     
170552
                           gb|AAG08715.1|AE004945_9
                           (AE004945) hypothetical protein PA5330 [Pseudomonas aeruginosa PAO1]
                           205
                           99.51
                           99.99
                           0
                           1008.0
     

     
     
170553
                           gb|AAO53635.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           216
                           50.00
                           68.05
                           17
                           525.0
     

     






      

          
GC ORFID: 46907How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5330Glimmer Score: 

          
Start: 5537986Stop: 5537369

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5330 translation of PA5330Homolog Bit Score 392.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3144 (ORF: BLASTX 212.0), t_PA5330 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCGGACAGGATGTAATGCGTTGCCTGATGGCCCTGGGGCTGGTGCTCCAGGGGCTTTCCTTCGGCGCC 
CAGGCGGCGCCGGGCGGAGCGGTGGAGCTTTACCGCTACGTCAACGACAAGGGCGTGGTGGTGCTCGACCGC 
CAGGGTGTGCCGCCGCAGTACATCGGCAAGGGCTACCAGGTCCTCAACGACCAGGGCCGGGTGATCCGCACC 
GTACCGCCGGCGCCGACCGCCGAGGAGCTGCGGCAGCGCAAGGCGGCCCAGGCCCAGGCCAGTTCCGATGCG 
CAGTTGCTGCGCCTGTATTCCAGCCTCGAGGACGTCGACCGCGCTCGCGAACGGCGCCTGGCGGAACTGGAC 
GGGCTGAGCAGCGTGGCGCGCGGCAACCTGCAGTCGCTCAAGCTGCAACAGGCCAACCTGCAAGGCCAGGCG 
GCCAACCAGGAGCGTGCCGGACGTCCGGTGGCGCAGGCGCTGGTGGACCAGCTGGACGATCTCAAGCAGGAG 
GAAAAGCGCCTGCAGGGTGAGATCGGGCGCTTCCAGAAGGCCCGCGAAGAGGCGGAAAGAACCTATGCCGCC 
GACCGCGCGCGGCTCTCCCAGCTACTCGGCGTGAGTCCCTGA