ViewGene
Locus Name:
GeneID:
Location:

GeneID:3904
TrivialName: PA14_65010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65010
PAO1 Ortholog Locus:PA4923
Sequence Length:588
Protein Length:195
Start: 5793755
Stop: 5794342
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08308.1|AE004905_6 (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 193/195 (98%), Positives = 195/195 (100%)
Sequence:
ATGACCTTGCGTTCCGTCTGCGTATTCTGTGGCGCCAGCCCCGGCGCTTCCCCGGTCTACCAGGAAGCCGCC
GTGGCCCTCGGCCGGCACCTGGCCGATCGCGGCCTGACCCTGGTCTACGGTGGCGGCGCGGTCGGTCTGATG
GGCACCGTGGCGGACGCCGCATTGGCCGCCGGCGGCGAAGTGATCGGGATCATCCCGCAGAGCCTGCAGGAG
GCCGAGATCGGCCACAAGGGCCTGACCCGCCTGGAAGTGGTAGACGGCATGCACGCGCGCAAGGCGCGCATG
GCCGAGCTGGCCGACGCCTTCGTCGCCCTGCCCGGCGGGCTCGGCACCCTGGAAGAGCTGTTCGAGGTCTGG
ACCTGGGGCCAACTGGGCTACCACGCCAAGCCGCTGGGCCTGCTCGAAGTGAACGGTTTCTACGATCCGCTG
CTGACCTTCCTCGACCACCTGGTCGACGAACGCTTCGTCCGCGCCGAACACCGCGGCATGCTGCAGCGCGGT
GCCAGCCCGGAGGCGCTGCTCGATGCCCTCGCCGCCTGGACGCCAAGCGTGGCGCCGAAGTGGGTCGACCGC
ACCCCGCAGTGA
Translation:
MTLRSVCVFCGASPGASPVYQEAAVALGRHLADRGLTLVYGGGAVGLMGTVADAALAAGGEVIGIIPQSLQE
AEIGHKGLTRLEVVDGMHARKARMAELADAFVALPGGLGTLEELFEVWTWGQLGYHAKPLGLLEVNGFYDPL
LTFLDHLVDERFVRAEHRGMLQRGASPEALLDALAAWTPSVAPKWVDRTPQ*
AnnotationID:3911GeneID:3904
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 11:11:50
Gene Name:
Confidence Code:3
GeneProduct:putative lysine decarboxylase
Cell Localization:()
Synonyms:PA4923
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1611,pfam03641
Secondary Functional Category(ies):DNA replication, recombination, and repair
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE30750.1| (BX640437) putative lysine decarboxylase [Bordetella
           bronchiseptica]
          Length = 208

 Score =  219 bits (558), Expect = 7e-57
 Identities = 103/190 (54%), Positives = 129/190 (67%)

>emb|CAE44875.1| (BX640412) putative lysine decarboxylase [Bordetella pertussis]
          Length = 195

 Score =  219 bits (558), Expect = 7e-57
 Identities = 103/190 (54%), Positives = 129/190 (67%)

>emb|CAE39989.1| (BX640423) putative lysine decarboxylase [Bordetella parapertussis]
          Length = 208

 Score =  219 bits (558), Expect = 7e-57
 Identities = 103/190 (54%), Positives = 129/190 (67%)






 
Structural Features:
COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein
CD-Length = 205 residues,  94.6% aligned
Score =  182 bits (464), Expect = 2e-47
Identities = 85/195 (43%), Positives = 105/195 (53%), Gaps = 5/195 (2%)

pfam03641, Lysine_decarbox, Possible lysine decarboxylase.
CD-Length = 136 residues, 100.0% aligned
Score =  159 bits (403), Expect = 2e-40
Identities = 75/136 (55%), Positives = 89/136 (65%), Gaps = 2/136 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7811




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24953




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35146




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3904_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3904
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6142
                           PA4923_tr
                           translation of PA4923
                           195
                           98.97
                           99.99
                           0
                           1007.0
     

     
     
170501
                           gb|AAG08308.1|AE004905_6
                           (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           195
                           98.97
                           99.99
                           0
                           1007.0
     

     
     
170502
                           gb|AAN70440.1|AE016685_5
                           (AE016792) conserved hypothetical protein TIGR00730 [Pseudomonas putida KT2440]
                           195
                           76.41
                           87.17
                           0
                           791.0
     

     
     
170503
                           emb|CAD15794.1|
                           (AL646068) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           196
                           54.08
                           67.85
                           3
                           576.0
     

     
     
170507
                           emb|CAE44875.1|
                           (BX640412) putative lysine decarboxylase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           197
                           52.79
                           65.98
                           4
                           552.0
     

     






      

          
GC ORFID: 46906How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4923Glimmer Score: 

          
Start: 5057436Stop: 5058023

          
Length: 588


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4923 translation of PA4923Homolog Bit Score 392.0

          
Other Homologs:  t_PA4923 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTTGCGTTCCGTCTGCGTATTCTGTGGCGCCAGCCCCGGCGCTTCCCCGGTCTACCAGGAAGCCGCC 
GTGGCCCTCGGCCGGCACCTGGCCGATCGCGGCCTGACCCTGGTCTACGGTGGCGGCGCGGTCGGTCTGATG 
GGCACCGTGGCGGACGCCGCATTGGCCGCCGGCGGCGAAGTGATCGGGATCATCCCGCAGAGCCTGCAGGAG 
GCCGAGATCGGCCACAAGGGCCTGACCCGCCTGGAAGTGGTAGACGGCATGCACGCGCGCAAGGCGCGCATG 
GCCGAGCTGGCCGACGCCTTCGTCGCCCTGCCCGGCGGGCTCGGCACCCTGGAAGAGCTGTTCGAGGTCTGG 
ACCTGGGGCCAACTGGGCTACCACGCCAAGCCGCTGGGCCTGCTCGAAGTGAACGGTTTCTACGATCCGCTG 
CTGACCTTCCTCGACCACCTGGTCGACGAACGCTTCGTCCGCGCCGAACACCGCGGCATGCTGCAGCGCGGT 
GCCAGCCCGGAGGCGCTGCTCGATGCCCTCGCCGCCTGGACGCCAAGCGTGGCGCCGAAGTGGGTCGACCGC 
ACCCCGCAGTGA