ViewGene
Locus Name:
GeneID:
Location:

GeneID:3903
TrivialName: PA14_56600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56600
PAO1 Ortholog Locus:PA4353
Sequence Length:573
Protein Length:190
Start: 5045450
Stop: 5044878
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07741.1|AE004851_9 (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/190 (100%), Positives = 190/190 (100%)
Sequence:
ATGAACTACCTCGCGCATCTCCACCTCGGCGGCCCGCAACCGGCCCAACTGCTCGGCAGCCTGTACGGCGAC
TTCGTCAAGGGCCGCCTGCAGGGACAATGGCCGGACGAGATCGAGCGGGCCATCCAGTTGCACCGGCGCATC
GACGCCTTCACCGACAGCCACCCACTGGTGCATGCGGCCAAGCGGCGCTTCCCGCTGGAGCGCCGGCGTTTC
GCCGGCGTCCTGCTGGACGTGTTCTTCGACCACTGCCTGGCGCGCGACTGGAACGACTACGCCGACGAACCG
CTGCCGCAGTTCGTCGAGCGGGTCTACGGCACCCTGCGCACCGCCTCGCCGCTGCCGGAGCGCCTGGCGCGC
ATCGCGCCGCGGATGGCGGCCCAGGACTGGCTGGGCAGCTACCGCGAGTTCGCGGTCTTGCGTGAAGTGCTG
GGCGGCATGTCGCGGAGGCTGTCGCGACCGCACCTGCTGGACGGCTCCTGGGAAGAACTGGCCCAGCGCTAC
GATGACCTGAGCGCGGATTTCCGCGCCTTCTACCCGCAACTCCAGGCTTTCGCCCTGAGCCAGCGCTGA
Translation:
MNYLAHLHLGGPQPAQLLGSLYGDFVKGRLQGQWPDEIERAIQLHRRIDAFTDSHPLVHAAKRRFPLERRRF
AGVLLDVFFDHCLARDWNDYADEPLPQFVERVYGTLRTASPLPERLARIAPRMAAQDWLGSYREFAVLREVL
GGMSRRLSRPHLLDGSWEELAQRYDDLSADFRAFYPQLQAFALSQR*
AnnotationID:3910GeneID:3903
AnnotatorUID: diggins
Modification Date/Time: 2005-05-01 08:08:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4353
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7809




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17108




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3903_cdd.html


    		




 
URL:

















    ReferenceID:24951




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3903
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6141
                           PA4353_tr
                           translation of PA4353
                           190
                           99.99
                           99.99
                           0
                           1008.0
     

     
     
170496
                           gb|AAG07741.1|AE004851_9
                           (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           190
                           99.99
                           99.99
                           0
                           1008.0
     

     
     
170497
                           gb|AAO57805.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           199
                           67.83
                           77.88
                           9
                           697.0
     

     
     
170498
                           gb|AAN66547.1|AE016283_6
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           194
                           61.85
                           72.68
                           4
                           620.0
     

     
     
170499
                           gb|AAF96667.1|
                           (AE004405) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           193
                           40.93
                           58.03
                           3
                           373.0
     

     






      

          
GC ORFID: 46905How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4353Glimmer Score: 

          
Start: 4309126Stop: 4308554

          
Length: 573


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4353 translation of PA4353Homolog Bit Score 392.0

          
Other Homologs:  t_PA4353 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACTACCTCGCGCATCTCCACCTCGGCGGCCCGCAACCGGCCCAACTGCTCGGCAGCCTGTACGGCGAC 
TTCGTCAAGGGCCGCCTGCAGGGACAATGGCCGGACGAGATCGAGCGGGCCATCCAGTTGCACCGGCGCATC 
GACGCCTTCACCGACAGCCACCCACTGGTGCATGCGGCCAAGCGGCGCTTCCCGCTGGAGCGCCGGCGTTTC 
GCCGGCGTCCTGCTGGACGTGTTCTTCGACCACTGCCTGGCGCGCGACTGGAACGACTACGCCGACGAACCG 
CTGCCGCAGTTCGTCGAGCGGGTCTACGGCACCCTGCGCACCGCCTCGCCGCTGCCGGAGCGCCTGGCGCGC 
ATCGCGCCGCGGATGGCGGCCCAGGACTGGCTGGGCAGCTACCGCGAGTTCGCGGTCTTGCGTGAAGTGCTG 
GGCGGCATGTCGCGGAGGCTGTCGCGACCGCACCTGCTGGACGGCTCCTGGGAAGAACTGGCCCAGCGCTAC 
GATGACCTGAGCGCGGATTTCCGCGCCTTCTACCCGCAACTCCAGGCTTTCGCCCTGAGCCAGCGCTGA