ViewGene
Locus Name:
GeneID:
Location:

GeneID:3902
TrivialName: PA14_24710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24710
PAO1 Ortholog Locus:PA3045
Sequence Length:624
Protein Length:207
Start: 2160174
Stop: 2160797
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06433.1|AE004729_7 (AE004729) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 207/207 (100%), Positives = 207/207 (100%)
Sequence:
ATGAGCCGTATCCTGATAGTCGACGATCATCCCGTGATTCGCATGGCCATGAAGATGTTGCTGGAAGCCGAA
GGGCACCAGATCGTCGGCGATACCGATAATGGCGTGGATGCCATCAGCCTCGGGCGGGAGCTGAAGCCGGAC
CTGGTCATCCTCGATATCGGCATTCCCAGGCTGGACGGCCTCGAGGTCATCAGCCGCCTGATGGTGCTGGCG
TTGCCCCTGAAGATCCTCGTCCTGACCGGCCAGAGCGCCTCGCTCTTCGCCCTGCGCAGCATGCAGGCGGGC
GCCGCCGGGTTCGTCTGCAAGCAGGGCGGACTGGCCGAACTGGTGACGGCGGTGAATGCGGTCGCCTCGGGA
TACAGTTACTTTCCCAGCTCGGCCATGCGTCCTGTGCAACAGGGCGCCTATTCCGACGATGTGGAATTGCTC
GGACGCCTGTCCGATCGCGAAGTATCGGTATTGCAATACCTCAGCCAGGGTTATTCGAACAAGCAGATATCC
GAGCAGATGTTTATCAGCAACAAGACCGTCAGCACTTACAAGGCGCGCTTGTTGTTGAAGTTGAACGCCGGC
TCGCTGGTGGATCTCATCGAGTTCGCCAAACGCAATACGCTTATCTAA
Translation:
MSRILIVDDHPVIRMAMKMLLEAEGHQIVGDTDNGVDAISLGRELKPDLVILDIGIPRLDGLEVISRLMVLA
LPLKILVLTGQSASLFALRSMQAGAAGFVCKQGGLAELVTAVNAVASGYSYFPSSAMRPVQQGAYSDDVELL
GRLSDREVSVLQYLSQGYSNKQISEQMFISNKTVSTYKARLLLKLNAGSLVDLIEFAKRNTLI*
AnnotationID:3909GeneID:3902
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 07:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA3045
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative DNA-binding response regulator, LuxR family
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57607.1| (AE016870) DNA-binding response regulator, LuxR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 208

 Score =  250 bits (639), Expect = 3e-66
 Identities = 123/208 (59%), Positives = 167/208 (80%), Gaps = 1/208 (0%)

>emb|CAE33486.1| (BX640446) virulence factors transcription regulator [Bordetella
           bronchiseptica]
          Length = 227

 Score =  240 bits (613), Expect = 3e-63
 Identities = 118/206 (57%), Positives = 161/206 (78%), Gaps = 1/206 (0%)

>emb|CAE38318.1| (BX640432) virulence factors transcription regulator [Bordetella
           parapertussis]
          Length = 233

 Score =  240 bits (613), Expect = 3e-63
 Identities = 118/206 (57%), Positives = 161/206 (78%), Gaps = 1/206 (0%)






 
Structural Features:
COG2197, CitB, Response regulator containing a CheY-like receiver domain 
and an HTH DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  98.6% aligned
Score =  179 bits (456), Expect = 2e-46
Identities = 80/208 (38%), Positives = 129/208 (62%), Gaps = 3/208 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7807




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24949




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36005




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3902_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3902
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6138
                           PA3045_tr
                           translation of PA3045
                           207
                           99.99
                           99.99
                           0
                           1008.0
     

     
     
170481
                           gb|AAG06433.1|AE004729_7
                           (AE004729) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           207
                           99.99
                           99.99
                           0
                           1008.0
     

     
     
6139
                           PA3948_tr
                           translation of PA3948
                           212
                           59.43
                           74.05
                           8
                           594.0
     

     
     
170492
                           gb|AAG07335.1|AE004813_2
                           (AE004813) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           212
                           59.43
                           74.05
                           8
                           594.0
     

     
     
170482
                           gb|AAO57607.1|
                           (AE016870) DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000]
                           208
                           59.13
                           80.28
                           1
                           641.0
     

     






      

          
GC ORFID: 46904How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3045Glimmer Score: 

          
Start: 2793754Stop: 2793131

          
Length: 624


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3045 translation of PA3045Homolog Bit Score 392.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6269 (ORF: BLASTX 250.0), psyr_15may02_Scaffold1_revised_gene352 (ORF: BLASTX 243.0), t_PA3948 (ORF: BLASTX 231.0), t_PA0034 (ORF: BLASTX 228.0), t_PA3045 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGTATCCTGATAGTCGACGATCATCCCGTGATTCGCATGGCCATGAAGATGTTGCTGGAAGCCGAA 
GGGCACCAGATCGTCGGCGATACCGATAATGGCGTGGATGCCATCAGCCTCGGGCGGGAGCTGAAGCCGGAC 
CTGGTCATCCTCGATATCGGCATTCCCAGGCTGGACGGCCTCGAGGTCATCAGCCGCCTGATGGTGCTGGCG 
TTGCCCCTGAAGATCCTCGTCCTGACCGGCCAGAGCGCCTCGCTCTTCGCCCTGCGCAGCATGCAGGCGGGC 
GCCGCCGGGTTCGTCTGCAAGCAGGGCGGACTGGCCGAACTGGTGACGGCGGTGAATGCGGTCGCCTCGGGA 
TACAGTTACTTTCCCAGCTCGGCCATGCGTCCTGTGCAACAGGGCGCCTATTCCGACGATGTGGAATTGCTC 
GGACGCCTGTCCGATCGCGAAGTATCGGTATTGCAATACCTCAGCCAGGGTTATTCGAACAAGCAGATATCC 
GAGCAGATGTTTATCAGCAACAAGACCGTCAGCACTTACAAGGCGCGCTTGTTGTTGAAGTTGAACGCCGGC 
TCGCTGGTGGATCTCATCGAGTTCGCCAAACGCAATACGCTTATCTAA