ViewGene

Locus Name:
GeneID:
Location:

GeneID:3901
TrivialName: PA14_25830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25830
PAO1 Ortholog Locus:PA2954
Sequence Length:570
Protein Length:189
Start: 2254297
Stop: 2254866
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06342.1|AE004721_10 (AE004721) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 187/189 (98%), Positives = 189/189 (100%)
Sequence:
ATGAGTGATACCGGCAAGGCCAACGACCTGCTGGCGCAGATCCCCAGGGGCGAAAAGAAGGGCCTGCCGCCC
GTGCACCTGTGGAATCCGCCGTTCTGCGGCGACATCGACATGCGCATCGCCCGCGACGGTACCTGGTTCTAC
CTGGGCACGCCGATCGGACGCAAGCCGATGGTGAAGCTGTTCTCCAGCATCATTCGCCGCGACGGCGACGAC
TATTTCCTGGTGACTCCGGTGGAAAAGGTCGGTATCCGCGTCGACGATGCGCCCTTCGTCGCGGTGACCCTG
CAGGTGCAGGGCGAGGGCGGGGCGCAGGTACTGCGCTTCGCCACCAACGTCGAGGACGAGGTCGAGGCGGAC
GCCGGGCATCCGCTGCGCGTCGAGATCGACCCCCGCACCCAGGAACCCACGCCCTACCTGCGGGTGCGCGAC
AACCTCGAGGCGCTGGTGCATCGCAACGTGTTCTACCAGCTGGTCGAGCTGGCGGTGCCGCGCCGGATCGAC
GGCATCGAATGGCTCGGCGTCTGGAGCCACGGCGAGTTCTTTCCCATCGGCCCGCAGCCGGACTGA
Translation:
MSDTGKANDLLAQIPRGEKKGLPPVHLWNPPFCGDIDMRIARDGTWFYLGTPIGRKPMVKLFSSIIRRDGDD
YFLVTPVEKVGIRVDDAPFVAVTLQVQGEGGAQVLRFATNVEDEVEADAGHPLRVEIDPRTQEPTPYLRVRD
NLEALVHRNVFYQLVELAVPRRIDGIEWLGVWSHGEFFPIGPQPD*
AnnotationID:3908GeneID:3901
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 17:05:12
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2954
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7805
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24947
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36091
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3901_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3901

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6137 PA2954_tr translation of PA2954 189 98.94 99.99 0 1007.0
170469 gb|AAG06342.1|AE004721_10 (AE004721) hypothetical protein PA2954 [Pseudomonas aeruginosa PAO1] 189 98.94 99.99 0 1007.0
170470 gb|AAN67586.1|AE016388_6 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 195 76.92 84.61 9 799.0
170471 gb|AAO57288.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 189 75.66 87.30 3 787.0
170477 gb|AAK22393.1| (AE005713) hypothetical protein [Caulobacter crescentus CB15] 195 52.30 66.66 14 476.0
GC ORFID: 46903How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2954Glimmer Score:
Start: 2699628Stop: 2699059
Length: 570
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2954 translation of PA2954Homolog Bit Score 392.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2620 (ORF: BLASTX 301.0), t_PA2954 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTGATACCGGCAAGGCCAACGACCTGCTGGCGCAGATCCCCAGGGGCGAAAAGAAGGGCCTGCCGCCC
GTGCACCTGTGGAATCCGCCGTTCTGCGGCGACATCGACATGCGCATCGCCCGCGACGGTACCTGGTTCTAC
CTGGGCACGCCGATCGGACGCAAGCCGATGGTGAAGCTGTTCTCCAGCATCATTCGCCGCGACGGCGACGAC
TATTTCCTGGTGACTCCGGTGGAAAAGGTCGGTATCCGCGTCGACGATGCGCCCTTCGTCGCGGTGACCCTG
CAGGTGCAGGGCGAGGGCGGGGCGCAGGTACTGCGCTTCGCCACCAACGTCGAGGACGAGGTCGAGGCGGAC
GCCGGGCATCCGCTGCGCGTCGAGATCGACCCCCGCACCCAGGAACCCACGCCCTACCTGCGGGTGCGCGAC
AACCTCGAGGCGCTGGTGCATCGCAACGTGTTCTACCAGCTGGTCGAGCTGGCGGTGCCGCGCCGGATCGAC
GGCATCGAATGGCTCGGCGTCTGGAGCCACGGCGAGTTCTTTCCCATCGGCCCGCAGCCGGACTGA