ViewGene
Locus Name:
GeneID:
Location:

GeneID:3900
TrivialName: PA14_30560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30560
PAO1 Ortholog Locus:PA2593
Sequence Length:573
Protein Length:190
Start: 2646081
Stop: 2645509
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05981.1|AE004688_3 (AE004688) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/190 (100%), Positives = 190/190 (100%)
Sequence:
ATGCTTATCCATTTCTGCCCCAGGCTGCTGACGCCTGCGGGGTTCGACCTGCCGTGCGAGCTGATCGACATC
CGCATCAAGGAGTTCGACCTGCACCTGCTTGGCGGGCGCGACGTGGTGGCGCGTCACCCCCTCCCCGACAAG
CGCTACCACGTGGCCTGCCGCAAGTCCGGCTGCAAGGCGGTGAATGGCCTGCTGGTGGACGTGGAAAAGCAC
GTTCCGCTGTTCACCGTGGACACCCGCTGGAGCATCGACGCCGAAGTGGTCCTGCGCCATCGCGTCGAGTAC
GTGGTGCTCGACGCCGAGCACGACGCGGTGAGCGACTACATGCTGTTGTGGTGCGACGAGGTGCCCAACTAC
TTCCTCGGCCAGAGCACCCCGGCCATGCAGGTTCCGTTGATGGAACTGATGCGCGGCAATGCGTTGCAGACC
GAGCGGCAGGATGTGTTCCGCCTGCCAACGCTGAGGTCCGAACGCCTGCGCCAGGGCAACGCCGATGCCAAC
CAGCATCTTCCGAGCCGTGAGCAGGCGTTCCACGTCAAGGCCGAGCAGATCAGCTATGGGCTGGCCTGA
Translation:
MLIHFCPRLLTPAGFDLPCELIDIRIKEFDLHLLGGRDVVARHPLPDKRYHVACRKSGCKAVNGLLVDVEKH
VPLFTVDTRWSIDAEVVLRHRVEYVVLDAEHDAVSDYMLLWCDEVPNYFLGQSTPAMQVPLMELMRGNALQT
ERQDVFRLPTLRSERLRQGNADANQHLPSREQAFHVKAEQISYGLA*
AnnotationID:3907GeneID:3900
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 08:08:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2593
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7803




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24945




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3900
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6136
                           PA2593_tr
                           translation of PA2593
                           190
                           99.99
                           99.99
                           0
                           1006.0
     

     
     
170468
                           gb|AAG05981.1|AE004688_3
                           (AE004688) hypothetical protein PA2593 [Pseudomonas aeruginosa PAO1]
                           190
                           99.99
                           99.99
                           0
                           1006.0
     

     






      

          
GC ORFID: 46902How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2593Glimmer Score: 

          
Start: 2307845Stop: 2308417

          
Length: 573


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2593 translation of PA2593Homolog Bit Score 392.0

          
Other Homologs:  t_PA2593 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTATCCATTTCTGCCCCAGGCTGCTGACGCCTGCGGGGTTCGACCTGCCGTGCGAGCTGATCGACATC 
CGCATCAAGGAGTTCGACCTGCACCTGCTTGGCGGGCGCGACGTGGTGGCGCGTCACCCCCTCCCCGACAAG 
CGCTACCACGTGGCCTGCCGCAAGTCCGGCTGCAAGGCGGTGAATGGCCTGCTGGTGGACGTGGAAAAGCAC 
GTTCCGCTGTTCACCGTGGACACCCGCTGGAGCATCGACGCCGAAGTGGTCCTGCGCCATCGCGTCGAGTAC 
GTGGTGCTCGACGCCGAGCACGACGCGGTGAGCGACTACATGCTGTTGTGGTGCGACGAGGTGCCCAACTAC 
TTCCTCGGCCAGAGCACCCCGGCCATGCAGGTTCCGTTGATGGAACTGATGCGCGGCAATGCGTTGCAGACC 
GAGCGGCAGGATGTGTTCCGCCTGCCAACGCTGAGGTCCGAACGCCTGCGCCAGGGCAACGCCGATGCCAAC 
CAGCATCTTCCGAGCCGTGAGCAGGCGTTCCACGTCAAGGCCGAGCAGATCAGCTATGGGCTGGCCTGA