ViewGene
Locus Name:
GeneID:
Location:

GeneID:390
TrivialName: PA14_38480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38480
PAO1 Ortholog Locus:PA2012
Sequence Length:1968
Protein Length:655
Start: 3431547
Stop: 3433514
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05400.1|AE004627_8 (AE004627) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa PAO1]
Identities = 646/655 (98%), Positives = 648/655 (98%)
Sequence:
ATGAACCCGGACTACCGCAGCATCCAGCGCATCCTGGTCGCCAACCGCGGCGAGATCGCCTGCCGGGTGATG
CGCAGCGCGCGCGCCCTCGGCATCGGCAGCGTCGCCGTGCACAGCGACATCGACCGCCACGCCCGCCACGTC
GCCGAAGCCGACATCGCCGTCGACCTGGGCGGCGCCAAGCCCGCCGACAGCTACCTGCGCGGCGACAGGATC
ATCGCCGCCGCCCTCGCCAGCGGCGCCCAGGCGATCCACCCCGGCTACGGCTTCCTCTCGGAGAACGCCGAC
TTCGCCCGCGCCTGCGAGGAAGCCGGCCTGCTCTTCCTCGGGCCGCCGGCGGCGGCCATCGACGCCATGGGC
AGCAAGTCGGCGGCCAAGGCGCTGATGGAAGAAGCCGGCGTGCCGCTGGTGCCCGGCTATCACGGCGAAGCC
CAGGACGCCGAGACCTTCCGCCGGGAAGCCGGAAGGATCGGCTACCCGGTGCTGCTCAAGGCCGCCGCTGGC
GGCGGCGGCAAGGGCATGAAGGTGGTGGAGCACGAAGCCGAGCTGGCCGAGGCCCTTTccTCCGCCCAGCGC
GAGGCCAAGGCCGCCTtCGGCGACGCGCGGATGCTGGTGGAGAAATACCTGCTGAAGCCGCGCCACGTgGAG
ATCCAGGTATTCGCCGATCGCCatggCCACTGCcTGTAcctCAACGAACGCGACTGTTCGATCCAGCGCCGC
CACCAGAAGGTCGTCGAGGAAGCCCCCGCCCCCGGTCTCGGCGCGGAACTGCGCCGGGCCATGGGCGAGGCC
GCGGTACGCGCGGCGCAGGCGATCGGCTACGTTGGCGCCGGTACCGTCGAATTCCTCCTCGACGAACGCGGC
CAGTTCTTCTTCATGGAAATGAACACCCGCCTGCAGGTGGAACACCCGGTCACCGAGGCCATCACCGGCCTC
GACCTGGTCGCCTGGCAGATCCGCGTCGCTCGCGGCGAGGCGCTGCCGCTGACACAGGAACAGGTGCCGCTG
AACGGCCACGCCATCGAAGTGCGGCTCTACGCGGAAGACCCCGAGGGCGGCTTCCTCCCCGCCAGCGGCCGC
CTGGCGCTGTACCGCGAAGCGCCCGCCGGCCCCGGCCGGCGGGTCGACAGCGGGGTACGCGAAGGCGACGAG
GTCTCGCCGTTCTACGACCCGATGCTGGCCAAGCTGATCGCCTGGGGCGAAACCCGCGAGGAAGCCCGCCAG
CGCCTGCTGGCGATGCTGGCGGAAACCTCGGTCGGCGGCCTGCGCACCAACCTGGCATTCCTCCGCCGCATC
CTCGCCCATCCGGCGTTCGCCGCCGCCGAACTGGACACCGGTTTCATCGCGCGCCACCAAGACGACCTGCTG
CCGGCGCCGCAAGCGCTGCCGGAGCATTTCTGGCAGGCCGCCGCCGAGGCCTGGCTGCAGAGCGAAGCGGGC
CACCGTCGCGACGACGACCCGTATTCGCCCTGGAGTCGCAACGACGGCTGGCGCAGCGCCCTGGCGCGGGAG
TCCGACCTGATGCTGCGCTGCCGCGACGAACGCCGCTGCGTCCGCCTGCGCCACGCCAGCCCCAGCCAGTAT
CGCCTCGACGGCGACGACCTGGTCAGCCGGGTGGACGGTGTCACCCGTCGCTCGGCGGCATTGCGCCGCGGA
CGCCAGTTGTTCCTCGAATGGGAGGGCGAACTGCTGGCCATCGAAGCCGTCGACCCGATCGCCGAGGCCGAG
GCCGCCCATGCCCACCAGGGCGGTTTGAGCGCGCCGATGAACGGCAGTATCGTGCGGGTCCTGGTCGAGCCC
GGCCAGACGGTCGAAGCCGGCGCCACCCTGGTGGTGCTGGAGGCGATGAAGATGGAGCACAGCATCCGCGCG
CCCCACGCCGGGGTAGTGAAGGCGCTGTATTGCAGCGAGGGCGAACTGGTCGAGGAAGGCACGCCGCTGGTG
GAGCTGGACGAGAACCAGGCCTGA
Translation:
MNPDYRSIQRILVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRI
IAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEA
QDAETFRREAGRIGYPVLLKAAAGGGGKGMKVVEHEAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVE
IQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDERG
QFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVARGEALPLTQEQVPLNGHAIEVRLYAEDPEGGFLPASGR
LALYREAPAGPGRRVDSGVREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVGGLRTNLAFLRRI
LAHPAFAAAELDTGFIARHQDDLLPAPQALPEHFWQAAAEAWLQSEAGHRRDDDPYSPWSRNDGWRSALARE
SDLMLRCRDERRCVRLRHASPSQYRLDGDDLVSRVDGVTRRSAALRRGRQLFLEWEGELLAIEAVDPIAEAE
AAHAHQGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLV
ELDENQA*
AnnotationID:399GeneID:390
AnnotatorUID: danlee
Modification Date/Time: 2005-09-26 12:12:39
Gene Name:gnyA
Confidence Code:1
GeneProduct:alpha subunit of geranoyl-CoA carboxylase, GnyA
Cell Localization:(1) Cytoplasmic
Synonyms:accA
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:putative biotin carboxylase subunit of acetyl-CoA carboxylase
Functional Category Confidence Code:5
COGs:COG4770,COG0439
Secondary Functional Category(ies):Fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:
Acyclic isoprenoid catabolism
Homology:
>gb|AAN69657.1|AE016600_7 (AE016789) acetyl-CoA carboxylase, biotin carboxylase, putative
           [Pseudomonas putida KT2440]
          Length = 650

 Score =  978 bits (2528), Expect = 0.0
 Identities = 495/646 (76%), Positives = 558/646 (86%)

>emb|CAE44779.1| (BX640412) biotin carboxylase subunit of acetyl-CoA carboxylase
           [Bordetella pertussis]
          Length = 673

 Score =  658 bits (1698), Expect = 0.0
 Identities = 358/673 (53%), Positives = 445/673 (66%), Gaps = 38/673 (5%)

>gb|AAN54946.1|AE015632_12 (AE015632) acetyl-CoA carboxylase, biotin carboxylase, putative
           [Shewanella oneidensis MR-1]
          Length = 694

 Score =  627 bits (1618), Expect = e-179
 Identities = 342/675 (50%), Positives = 460/675 (68%), Gaps = 35/675 (5%)
Structural Features:
COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit 
[Lipid metabolism]
CD-Length = 645 residues, 100.0% aligned
Score =  864 bits (2233), Expect = 0.0
Identities = 378/651 (58%), Positives = 445/651 (68%), Gaps = 11/651 (1%)

COG0439, AccC, Biotin carboxylase [Lipid metabolism] 
CD-Length = 449 residues,  98.7% aligned
Score =  528 bits (1362), Expect = 7e-151
Identities = 258/444 (58%), Positives = 319/444 (71%), Gaps = 1/444 (0%)
Genomic Context:






   
Comment:


















    ReferenceID:783




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17925




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32718




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:390_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:390
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
650
                           PA2012_tr
                           translation of PA2012
                           655
                           98.62
                           98.93
                           0
                           3304.0
     

     
     
29682
                           gb|AAG05400.1|AE004627_8
                           (AE004627) probable acyl-CoA carboxylase alpha chain [Pseudomonas aeruginosa PAO1]
                           655
                           98.62
                           98.93
                           0
                           3304.0
     

     
     
29683
                           gb|AAN69657.1|AE016600_7
                           (AE016789) acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas putida KT2440]
                           656
                           75.60
                           85.21
                           7
                           2523.0
     

     
     
29684
                           gb|AAO56237.1|
                           (AE016865) biotin carboxylase/biotin-containing subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           656
                           70.88
                           80.94
                           8
                           2348.0
     

     
     
29686
                           gb|AAQ59436.1|
                           (AE016916) probable acyl-coA carboxylase subunit [Chromobacterium violaceum ATCC 12472]
                           680
                           53.23
                           68.08
                           54
                           1730.0
     

     






      

          
GC ORFID: 43392How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2012Glimmer Score: 

          
Start: 1522364Stop: 1520397

          
Length: 1968


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2012 translation of PA2012Homolog Bit Score 1277.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8073 (ORF: BLASTX 926.0), t_PA2891 (ORF: BLASTX 599.0), t_PA2012 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCCGGACTACCGCAGCATCCAGCGCATCCTGGTCGCCAACCGCGGCGAGATCGCCTGCCGGGTGATG 
CGCAGCGCGCGCGCCCTCGGCATCGGCAGCGTCGCCGTGCACAGCGACATCGACCGCCACGCCCGCCACGTC 
GCCGAAGCCGACATCGCCGTCGACCTGGGCGGCGCCAAGCCCGCCGACAGCTACCTGCGCGGCGACAGGATC 
ATCGCCGCCGCCCTCGCCAGCGGCGCCCAGGCGATCCACCCCGGCTACGGCTTCCTCTCGGAGAACGCCGAC 
TTCGCCCGCGCCTGCGAGGAAGCCGGCCTGCTCTTCCTCGGGCCGCCGGCGGCGGCCATCGACGCCATGGGC 
AGCAAGTCGGCGGCCAAGGCGCTGATGGAAGAAGCCGGCGTGCCGCTGGTGCCCGGCTATCACGGCGAAGCC 
CAGGACGCCGAGACCTTCCGCCGGGAAGCCGGAAGGATCGGCTACCCGGTGCTGCTCAAGGCCGCCGCTGGC 
GGCGGCGGCAAGGGCATGAAGGTGGTGGAGCACGAAGCCGAGCTGGCCGAGGCCCTTTccTCCGCCCAGCGC 
GAGGCCAAGGCCGCCTtCGGCGACGCGCGGATGCTGGTGGAGAAATACCTGCTGAAGCCGCGCCACGTgGAG 
ATCCAGGTATTCGCCGATCGCCatggCCACTGCcTGTAcctCAACGAACGCGACTGTTCGATCCAGCGCCGC 
CACCAGAAGGTCGTCGAGGAAGCCCCCGCCCCCGGTCTCGGCGCGGAACTGCGCCGGGCCATGGGCGAGGCC 
GCGGTACGCGCGGCGCAGGCGATCGGCTACGTTGGCGCCGGTACCGTCGAATTCCTCCTCGACGAACGCGGC 
CAGTTCTTCTTCATGGAAATGAACACCCGCCTGCAGGTGGAACACCCGGTCACCGAGGCCATCACCGGCCTC 
GACCTGGTCGCCTGGCAGATCCGCGTCGCTCGCGGCGAGGCGCTGCCGCTGACACAGGAACAGGTGCCGCTG 
AACGGCCACGCCATCGAAGTGCGGCTCTACGCGGAAGACCCCGAGGGCGGCTTCCTCCCCGCCAGCGGCCGC 
CTGGCGCTGTACCGCGAAGCGCCCGCCGGCCCCGGCCGGCGGGTCGACAGCGGGGTACGCGAAGGCGACGAG 
GTCTCGCCGTTCTACGACCCGATGCTGGCCAAGCTGATCGCCTGGGGCGAAACCCGCGAGGAAGCCCGCCAG 
CGCCTGCTGGCGATGCTGGCGGAAACCTCGGTCGGCGGCCTGCGCACCAACCTGGCATTCCTCCGCCGCATC 
CTCGCCCATCCGGCGTTCGCCGCCGCCGAACTGGACACCGGTTTCATCGCGCGCCACCAAGACGACCTGCTG 
CCGGCGCCGCAAGCGCTGCCGGAGCATTTCTGGCAGGCCGCCGCCGAGGCCTGGCTGCAGAGCGAAGCGGGC 
CACCGTCGCGACGACGACCCGTATTCGCCCTGGAGTCGCAACGACGGCTGGCGCAGCGCCCTGGCGCGGGAG 
TCCGACCTGATGCTGCGCTGCCGCGACGAACGCCGCTGCGTCCGCCTGCGCCACGCCAGCCCCAGCCAGTAT 
CGCCTCGACGGCGACGACCTGGTCAGCCGGGTGGACGGTGTCACCCGTCGCTCGGCGGCATTGCGCCGCGGA 
CGCCAGTTGTTCCTCGAATGGGAGGGCGAACTGCTGGCCATCGAAGCCGTCGACCCGATCGCCGAGGCCGAG 
GCCGCCCATGCCCACCAGGGCGGTTTGAGCGCGCCGATGAACGGCAGTATCGTGCGGGTCCTGGTCGAGCCC 
GGCCAGACGGTCGAAGCCGGCGCCACCCTGGTGGTGCTGGAGGCGATGAAGATGGAGCACAGCATCCGCGCG 
CCCCACGCCGGGGTAGTGAAGGCGCTGTATTGCAGCGAGGGCGAACTGGTCGAGGAAGGCACGCCGCTGGTG 
GAGCTGGACGAGAACCAGGCCTGA