ViewGene
Locus Name:
GeneID:
Location:

GeneID:39
TrivialName: PA14_42900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42900
PAO1 Ortholog Locus:PA1669
Sequence Length:3528
Protein Length:1175
Start: 3815741
Stop: 3812214
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05058.1|AE004594_10 (AE004594) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1170/1175 (99%), Positives = 1173/1175 (99%)
Sequence:
ATGAAAAACTTCTTCAAGAAAGTCGGCGCCTTCCTGCGCAAGACGTGGGTCTGGACGCTGCTGCTGGTACTC
CTGGCGGCATTGCTGGTGTGGTTCGTCGGGCCGCTGCTGGCGGTCGCCGACTACAAGTTCTGGGAAAGCCCG
ACCTCGCGGTTGCTGAGCATCAGTCTGATGTTCCTGGTCTGGGGGCTGGCGATGGTCTTCGTCAGCTGGCGC
GCCGGAGTGCGGCGCAAGGCCGTCGAGGACAGCGACGAGGGCCAGGAGCGCCTGCGCCGTGACGGTCTGATC
GAAGACGAACAGAAGGAATTGCGCAGCCGCTTCAAGGACGCCTTGCGCACCCTGAAGACCTCCAGCCTGTAC
CGCGGTCGTAGCGAGCGCTGGCGCAACGAGCTGCCCTGGTACCTGCTGATCGGCCCGCAGGGAAGCGGCAAG
ACCAGCCTGCTGGACTTTTCCGGACTGGAGTTCCCGATCAACCGGATCGACCGCAAGCTGACCCGCGATACC
GCCGGCACGCGCTACTGCGACTGGTACTTCGCCGACCACGGCGTCCTGATCGACACCGCCGGGCGCTACCTG
ACCCAAGCCGACGGCGAGGTCGACGGGGGCGCCTGGGCGACCCTGCTCGGCCTGTTGCGCAAGCGCCGCCGC
GCACGGCCGCTGAATGGCGTGATGGTGTCGATTCCGGTGGAAACGTTGCTCAGCGACGACGAGATGGCGCTG
GATACGCTGGCTCGCCAGGTGCGCGCGCGCCTGCAGGAAATCCAGCAGACCCTGCACCTCGATCTGCCGGTC
TACCTGGTGCTGAGCAAGGCCGACCAGTTGCTCGGCTTCGACGAGTTCTTCGACCAGTTGAGCCGCGAGGAG
AGCGACCAGGTTCTGGGCACCAGCTTCGGCAAGGAGCAGAACGGCACCGATGTGACGGTCCTGCGCCAGGCG
TTCGAGGACCTTCTGCGACGCCTGAACAGCCAGGTGATCATGCGCATCCACCAGGAGCGCGATACTCTGCGT
CGCGGTCGCATCCTCGACTTCCCGCACCAGCTTGGCCAGATCGGCGAGCGGTTGTGCCTGTTCGTCGAACTC
GCCTTCACCGGCAATCGCTACCAGCGCGCCAGCCGCCTGCGCGGCTTCTACCTGACCAGCGCGCCGCACCTG
GCCCAGCAGCTGGATGAGGACACCGCCGGCATCGGCGCCAACCTGGGGATCGCCAGCGGCCTGCTGCCGACC
CTGCGCAACGGGCGCTCGCGCTTCATCCATCACCTGCTGAGCCAGGTGATCTTCCCCGAGGCCAACCTGGCA
GGTCTCGATCGCCGCGAGCGCACGCGCATCCACTGGGGCCAGCGCGCCCTGTACGTCGGTTCGCTGGCGCTC
CTTCTGCTATTCGGCCTGCTCTGGGCTGGCGGTTTCTCGGCCAACCACGAGCGCCTGGAGCGGGTCCGCGAG
CTGGCGCAGCAATGGGCCCAGCAGCGCCAGGCGCTTGGCGAGCGCGACGACGCCATGGCGGCGCTGAAGACG
CTGGATAGCAGCTATGCGGCGACCACCGTGTTTCCGCCCAAAGGCGAAGTCTCGCTGCACGAGCGCGCCGGG
CTGTACCAGGGCAACGAGGTCAACCCGCCGCTGACCGCTGCCTATCGCCGCGAGCTGGAGACGCAACTGCTG
CCGCGCGTGGCGCGGATGCTCGAAGCGCAGATCCGCGGCAACATGCAGAATCGCGAACGCCTGCTCAACAGC
CTGCGGGCCTACCTGATGCTGAATCTGCGCGAGCGCCGCGAGAACGGATGGCTCAAGGACTGGGTGGCTACC
GACTGGTCGCAGCGCTATGCCGGCAACGGCACCGTGCAGAATGGCCTGAACACGCATTTCGCCCGTCTGCTC
GAGCAACCGTTCAGCTATCCGCTGAACGACACCCTGGTGGCCCAGGCACGCCAGGTGCTGCGCAGCGAGTCC
CTGGCCAACGTGGTCTACCGGGTGCTGCGCGAACAGGCGCGAAGCCTGCCCGAGTATCGCTTCGGCCAGCAC
CTGGGGCCGCAGGCCGGTCTGTTCGTCGGCACCGACTACGTGATCCCGGGGTTCTACACCCAGCAGGGCTAC
CAGCAGTACTTCGTGGTCCAGGGCGCCAGCCTGGTCAACGACATCCTTCGCGACAACTGGGTCCTGGGCGAG
GGCAGCGGGATCAGCGACATGGACCTGCGGCGCCTGATGGTCGAACTCGAGCAGTTGTATTTCCGCGACTAC
GCGAACTTCTGGAGCGAGGCGGTCGGACGCCTGGGCCTGCTGCCGTTCAACGATGCCGGCGAGGGCGCCGAC
CAGGTTTCCGGGCTGCTCGCCGCCAACTCGCCGATCCTCCAGTTGTTGCTGGAGGTCCGTGAGAACACCCGT
TTCCCGGTCCTGGCGGAGAGCGCCGAGGCGCTGGCAGAGGCCAGCGACAAGGCCGCGGAAAAGGGCGGCAAG
CTGGGCAAGGCGGCCGCCGCGGCGGCCGGCAAGGCCAGGGACGCGTTGGCGAAGAACCTGCCGGATACCGCG
AAGAAGTCCCTGCAACGCCGCTTCGAGCCCCTGCATCGCCTGCTCGACGATAACAACGGCCCGGCGGCCGAC
CTCACCCCGCTGTTGCAGGCGCTCAACGAGTTGCAGTTGCAACTCGCCGGACTGGCGCGCGCCAGCCAGCCG
GAGCAGGCGGCTTTCGACATGGCGAAGAGCCGCATGGGCGGCCAGCGCGATGCCCTGAGCAACCTGCGCAAC
GCCTCCGCGCGACTGCCGCGACCGCTCGGCGGATGGTTCAGCGTGCTGGCCGAAGACGCCTGGCGGCTGGTC
CTCGGCGATGCCTACCTGTACCTCAACCAGCGCTACCAGAGCGAGCTGTACGGTTTCTACAGCAAGGCGATC
AACAAGCGCTACCCGTTCAACGCGCACAGCGCCAGCGATGTCGCGGTCAGCGATTTCCGCGAGTTCTTCAAG
GCGCAGGGCGTCGCCGAACGCTTCTTCGAAACCTACATGCGGCCCTTCGTCAGCGGCGACCCGGGCAGCTAC
CGCCTGCGCAGCGTGGACGGCTACAGCCTGCCGATGTCCAAGGTCTATCTCGACCAGATGGGCACGGCCCAG
GTGATTCGCCAGAGCTTCTTCGCCGAGAACCCGGCCGAGCCGCAGGTGCGCTTCCGTCTGGAGCCCTATACC
CTCGATCCTGGCGTCAGCCGCGCCGAGTTCCGTTTCGACGGTCAATCCATGGAATACCGCCACGGCCCGATC
GTGCCGATGTCGTTCAAGTGGCCCAGCGACGCCGACGGCGGCCGCACCAGCCTGGTGCTGGAGAAGATGGCC
GGGCGACCGGTGGGAATCGAACGCAATACCGGGCCCTGGTCGCTGTTCAGGCTGTTCGACCTGATGCAGACC
GAGTACCTCAGCGGGCGTGACGTGATGGTGCTCAAGGCCGACCTGGGCGGCCTGCGCGCCAACTACCTGCTG
CTCGCCCAGCGCACGCCGAATCCGTTCGATCTCGCGGTCCTGCGCAGCTTCCGCATGCCGGTGCAGCTCTGA
Translation:
MKNFFKKVGAFLRKTWVWTLLLVLLAALLVWFVGPLLAVADYKFWESPTSRLLSISLMFLVWGLAMVFVSWR
AGVRRKAVEDSDEGQERLRRDGLIEDEQKELRSRFKDALRTLKTSSLYRGRSERWRNELPWYLLIGPQGSGK
TSLLDFSGLEFPINRIDRKLTRDTAGTRYCDWYFADHGVLIDTAGRYLTQADGEVDGGAWATLLGLLRKRRR
ARPLNGVMVSIPVETLLSDDEMALDTLARQVRARLQEIQQTLHLDLPVYLVLSKADQLLGFDEFFDQLSREE
SDQVLGTSFGKEQNGTDVTVLRQAFEDLLRRLNSQVIMRIHQERDTLRRGRILDFPHQLGQIGERLCLFVEL
AFTGNRYQRASRLRGFYLTSAPHLAQQLDEDTAGIGANLGIASGLLPTLRNGRSRFIHHLLSQVIFPEANLA
GLDRRERTRIHWGQRALYVGSLALLLLFGLLWAGGFSANHERLERVRELAQQWAQQRQALGERDDAMAALKT
LDSSYAATTVFPPKGEVSLHERAGLYQGNEVNPPLTAAYRRELETQLLPRVARMLEAQIRGNMQNRERLLNS
LRAYLMLNLRERRENGWLKDWVATDWSQRYAGNGTVQNGLNTHFARLLEQPFSYPLNDTLVAQARQVLRSES
LANVVYRVLREQARSLPEYRFGQHLGPQAGLFVGTDYVIPGFYTQQGYQQYFVVQGASLVNDILRDNWVLGE
GSGISDMDLRRLMVELEQLYFRDYANFWSEAVGRLGLLPFNDAGEGADQVSGLLAANSPILQLLLEVRENTR
FPVLAESAEALAEASDKAAEKGGKLGKAAAAAAGKARDALAKNLPDTAKKSLQRRFEPLHRLLDDNNGPAAD
LTPLLQALNELQLQLAGLARASQPEQAAFDMAKSRMGGQRDALSNLRNASARLPRPLGGWFSVLAEDAWRLV
LGDAYLYLNQRYQSELYGFYSKAINKRYPFNAHSASDVAVSDFREFFKAQGVAERFFETYMRPFVSGDPGSY
RLRSVDGYSLPMSKVYLDQMGTAQVIRQSFFAENPAEPQVRFRLEPYTLDPGVSRAEFRFDGQSMEYRHGPI
VPMSFKWPSDADGGRTSLVLEKMAGRPVGIERNTGPWSLFRLFDLMQTEYLSGRDVMVLKADLGGLRANYLL
LAQRTPNPFDLAVLRSFRMPVQL*
AnnotationID:49GeneID:39
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 18:06:03
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1669
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:81




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17223




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37180




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:39_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:39
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
78
                           PA1669_tr
                           translation of PA1669
                           1175
                           99.57
                           99.82
                           0
                           6023.0
     

     
     
11497
                           gb|AAG05058.1|AE004594_10
                           (AE004594) hypothetical protein PA1669 [Pseudomonas aeruginosa PAO1]
                           1175
                           99.57
                           99.82
                           0
                           6023.0
     

     
     
11498
                           gb|AAO58840.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           1192
                           77.51
                           88.59
                           17
                           4954.0
     

     
     
11499
                           gb|AAO56059.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           1178
                           58.91
                           74.02
                           13
                           3613.0
     

     






      

          
GC ORFID: 43041How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1669Glimmer Score: 

          
Start: 1138168Stop: 1141695

          
Length: 3528


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1669 translation of PA1669Homolog Bit Score 2324.0

          
Other Homologs:  t_PA1669 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAACTTCTTCAAGAAAGTCGGCGCCTTCCTGCGCAAGACGTGGGTCTGGACGCTGCTGCTGGTACTC 
CTGGCGGCATTGCTGGTGTGGTTCGTCGGGCCGCTGCTGGCGGTCGCCGACTACAAGTTCTGGGAAAGCCCG 
ACCTCGCGGTTGCTGAGCATCAGTCTGATGTTCCTGGTCTGGGGGCTGGCGATGGTCTTCGTCAGCTGGCGC 
GCCGGAGTGCGGCGCAAGGCCGTCGAGGACAGCGACGAGGGCCAGGAGCGCCTGCGCCGTGACGGTCTGATC 
GAAGACGAACAGAAGGAATTGCGCAGCCGCTTCAAGGACGCCTTGCGCACCCTGAAGACCTCCAGCCTGTAC 
CGCGGTCGTAGCGAGCGCTGGCGCAACGAGCTGCCCTGGTACCTGCTGATCGGCCCGCAGGGAAGCGGCAAG 
ACCAGCCTGCTGGACTTTTCCGGACTGGAGTTCCCGATCAACCGGATCGACCGCAAGCTGACCCGCGATACC 
GCCGGCACGCGCTACTGCGACTGGTACTTCGCCGACCACGGCGTCCTGATCGACACCGCCGGGCGCTACCTG 
ACCCAAGCCGACGGCGAGGTCGACGGGGGCGCCTGGGCGACCCTGCTCGGCCTGTTGCGCAAGCGCCGCCGC 
GCACGGCCGCTGAATGGCGTGATGGTGTCGATTCCGGTGGAAACGTTGCTCAGCGACGACGAGATGGCGCTG 
GATACGCTGGCTCGCCAGGTGCGCGCGCGCCTGCAGGAAATCCAGCAGACCCTGCACCTCGATCTGCCGGTC 
TACCTGGTGCTGAGCAAGGCCGACCAGTTGCTCGGCTTCGACGAGTTCTTCGACCAGTTGAGCCGCGAGGAG 
AGCGACCAGGTTCTGGGCACCAGCTTCGGCAAGGAGCAGAACGGCACCGATGTGACGGTCCTGCGCCAGGCG 
TTCGAGGACCTTCTGCGACGCCTGAACAGCCAGGTGATCATGCGCATCCACCAGGAGCGCGATACTCTGCGT 
CGCGGTCGCATCCTCGACTTCCCGCACCAGCTTGGCCAGATCGGCGAGCGGTTGTGCCTGTTCGTCGAACTC 
GCCTTCACCGGCAATCGCTACCAGCGCGCCAGCCGCCTGCGCGGCTTCTACCTGACCAGCGCGCCGCACCTG 
GCCCAGCAGCTGGATGAGGACACCGCCGGCATCGGCGCCAACCTGGGGATCGCCAGCGGCCTGCTGCCGACC 
CTGCGCAACGGGCGCTCGCGCTTCATCCATCACCTGCTGAGCCAGGTGATCTTCCCCGAGGCCAACCTGGCA 
GGTCTCGATCGCCGCGAGCGCACGCGCATCCACTGGGGCCAGCGCGCCCTGTACGTCGGTTCGCTGGCGCTC 
CTTCTGCTATTCGGCCTGCTCTGGGCTGGCGGTTTCTCGGCCAACCACGAGCGCCTGGAGCGGGTCCGCGAG 
CTGGCGCAGCAATGGGCCCAGCAGCGCCAGGCGCTTGGCGAGCGCGACGACGCCATGGCGGCGCTGAAGACG 
CTGGATAGCAGCTATGCGGCGACCACCGTGTTTCCGCCCAAAGGCGAAGTCTCGCTGCACGAGCGCGCCGGG 
CTGTACCAGGGCAACGAGGTCAACCCGCCGCTGACCGCTGCCTATCGCCGCGAGCTGGAGACGCAACTGCTG 
CCGCGCGTGGCGCGGATGCTCGAAGCGCAGATCCGCGGCAACATGCAGAATCGCGAACGCCTGCTCAACAGC 
CTGCGGGCCTACCTGATGCTGAATCTGCGCGAGCGCCGCGAGAACGGATGGCTCAAGGACTGGGTGGCTACC 
GACTGGTCGCAGCGCTATGCCGGCAACGGCACCGTGCAGAATGGCCTGAACACGCATTTCGCCCGTCTGCTC 
GAGCAACCGTTCAGCTATCCGCTGAACGACACCCTGGTGGCCCAGGCACGCCAGGTGCTGCGCAGCGAGTCC 
CTGGCCAACGTGGTCTACCGGGTGCTGCGCGAACAGGCGCGAAGCCTGCCCGAGTATCGCTTCGGCCAGCAC 
CTGGGGCCGCAGGCCGGTCTGTTCGTCGGCACCGACTACGTGATCCCGGGGTTCTACACCCAGCAGGGCTAC 
CAGCAGTACTTCGTGGTCCAGGGCGCCAGCCTGGTCAACGACATCCTTCGCGACAACTGGGTCCTGGGCGAG 
GGCAGCGGGATCAGCGACATGGACCTGCGGCGCCTGATGGTCGAACTCGAGCAGTTGTATTTCCGCGACTAC 
GCGAACTTCTGGAGCGAGGCGGTCGGACGCCTGGGCCTGCTGCCGTTCAACGATGCCGGCGAGGGCGCCGAC 
CAGGTTTCCGGGCTGCTCGCCGCCAACTCGCCGATCCTCCAGTTGTTGCTGGAGGTCCGTGAGAACACCCGT 
TTCCCGGTCCTGGCGGAGAGCGCCGAGGCGCTGGCAGAGGCCAGCGACAAGGCCGCGGAAAAGGGCGGCAAG 
CTGGGCAAGGCGGCCGCCGCGGCGGCCGGCAAGGCCAGGGACGCGTTGGCGAAGAACCTGCCGGATACCGCG 
AAGAAGTCCCTGCAACGCCGCTTCGAGCCCCTGCATCGCCTGCTCGACGATAACAACGGCCCGGCGGCCGAC 
CTCACCCCGCTGTTGCAGGCGCTCAACGAGTTGCAGTTGCAACTCGCCGGACTGGCGCGCGCCAGCCAGCCG 
GAGCAGGCGGCTTTCGACATGGCGAAGAGCCGCATGGGCGGCCAGCGCGATGCCCTGAGCAACCTGCGCAAC 
GCCTCCGCGCGACTGCCGCGACCGCTCGGCGGATGGTTCAGCGTGCTGGCCGAAGACGCCTGGCGGCTGGTC 
CTCGGCGATGCCTACCTGTACCTCAACCAGCGCTACCAGAGCGAGCTGTACGGTTTCTACAGCAAGGCGATC 
AACAAGCGCTACCCGTTCAACGCGCACAGCGCCAGCGATGTCGCGGTCAGCGATTTCCGCGAGTTCTTCAAG 
GCGCAGGGCGTCGCCGAACGCTTCTTCGAAACCTACATGCGGCCCTTCGTCAGCGGCGACCCGGGCAGCTAC 
CGCCTGCGCAGCGTGGACGGCTACAGCCTGCCGATGTCCAAGGTCTATCTCGACCAGATGGGCACGGCCCAG 
GTGATTCGCCAGAGCTTCTTCGCCGAGAACCCGGCCGAGCCGCAGGTGCGCTTCCGTCTGGAGCCCTATACC 
CTCGATCCTGGCGTCAGCCGCGCCGAGTTCCGTTTCGACGGTCAATCCATGGAATACCGCCACGGCCCGATC 
GTGCCGATGTCGTTCAAGTGGCCCAGCGACGCCGACGGCGGCCGCACCAGCCTGGTGCTGGAGAAGATGGCC 
GGGCGACCGGTGGGAATCGAACGCAATACCGGGCCCTGGTCGCTGTTCAGGCTGTTCGACCTGATGCAGACC 
GAGTACCTCAGCGGGCGTGACGTGATGGTGCTCAAGGCCGACCTGGGCGGCCTGCGCGCCAACTACCTGCTG 
CTCGCCCAGCGCACGCCGAATCCGTTCGATCTCGCGGTCCTGCGCAGCTTCCGCATGCCGGTGCAGCTCTGA