ViewGene
Locus Name:
GeneID:
Location:

GeneID:3899
TrivialName: PA14_36300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36300
PAO1 Ortholog Locus:PA2196
Sequence Length:585
Protein Length:194
Start: 3233266
Stop: 3232682
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05584.1|AE004646_5 (AE004646) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 192/194 (98%), Positives = 193/194 (99%)
Sequence:
ATGAAACCCAGCTACGACGACACCCGCCAGCATCTGCTCGATACCGGATACCGGATCATGGCGGTCAAAGGC
TTCTCCGGCGTCGGCCTCAACGAAATCCTGCAGACCGCGGGCGTTCCCAAGGGCTCGTTCTACCATTACTTC
AAATCCAAGGAACAGTTCGGCCAGGCCCTGCTGGAGGACTACTTCCGCGTCTACCTGGCGGACATGGACCAA
CGCTTCTCCGCGCCAGGGCTGAATGCCCGCGAACGACTGATGAGTTACTGGCAGAAGTGGCTGGACAACGCC
TGCCCGCCCTGCGACGAGCAGCGCTGCCTGGTGGTCAAGCTCAGCGCCGAGGTCGCGGACCTTTCGGAAAGC
ATGCGCATCACCCTGCGCGACGGCTCCGACGGGATCATCGAACGCCTGGTCGGCTGCCTCGGGCAGGGCCGC
GACGACGGCTCCCTCGCGCCCTGCGATGCCCGGCACATGGCCAGCGCGCTGTACCAGTTGTGGCTCGGCGCG
AGCCTGCTGAGCAAGCTGCACCGCAGCCCGGGACCGCTGGAAACAGCCATGCAGACCACCCGCAGCCTGCTG
GAAATCTGA
Translation:
MKPSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQTAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQ
RFSAPGLNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADLSESMRITLRDGSDGIIERLVGCLGQGR
DDGSLAPCDARHMASALYQLWLGASLLSKLHRSPGPLETAMQTTRSLLEI*
AnnotationID:3906GeneID:3899
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:41
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA2196
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68087.1|AE016440_7 (AE016783) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 197

 Score =  294 bits (752), Expect = 2e-79
 Identities = 143/192 (74%), Positives = 163/192 (84%)

>gb|AAN57433.1|AE015879_3 (AE015879) transcriptional regulator, TetR family [Shewanella
           oneidensis MR-1]
          Length = 198

 Score =  204 bits (519), Expect = 2e-52
 Identities = 104/193 (53%), Positives = 132/193 (68%)








 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  87.1% aligned
Score = 73.5 bits (178), Expect = 1e-14
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 2/177 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7801




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24943




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32556




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3899_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3899
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6135
                           PA2196_tr
                           translation of PA2196
                           194
                           98.96
                           99.48
                           0
                           1008.0
     

     
     
170448
                           gb|AAG05584.1|AE004646_5
                           (AE004646) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           194
                           98.96
                           99.48
                           0
                           1008.0
     

     
     
170449
                           gb|AAN68087.1|AE016440_7
                           (AE016783) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           197
                           72.58
                           82.74
                           3
                           749.0
     

     
     
170450
                           gb|AAN57433.1|AE015879_3
                           (AE015879) transcriptional regulator, TetR family [Shewanella oneidensis MR-1]
                           198
                           52.52
                           66.66
                           4
                           516.0
     

     
     
170454
                           gb|AAO56565.1|
                           (AE016867) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           195
                           49.74
                           65.12
                           3
                           466.0
     

     






      

          
GC ORFID: 46901How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2196Glimmer Score: 

          
Start: 1720650Stop: 1721234

          
Length: 585


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2196 translation of PA2196Homolog Bit Score 392.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7162 (ORF: BLASTX 181.0), t_PA2196 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACCCAGCTACGACGACACCCGCCAGCATCTGCTCGATACCGGATACCGGATCATGGCGGTCAAAGGC 
TTCTCCGGCGTCGGCCTCAACGAAATCCTGCAGACCGCGGGCGTTCCCAAGGGCTCGTTCTACCATTACTTC 
AAATCCAAGGAACAGTTCGGCCAGGCCCTGCTGGAGGACTACTTCCGCGTCTACCTGGCGGACATGGACCAA 
CGCTTCTCCGCGCCAGGGCTGAATGCCCGCGAACGACTGATGAGTTACTGGCAGAAGTGGCTGGACAACGCC 
TGCCCGCCCTGCGACGAGCAGCGCTGCCTGGTGGTCAAGCTCAGCGCCGAGGTCGCGGACCTTTCGGAAAGC 
ATGCGCATCACCCTGCGCGACGGCTCCGACGGGATCATCGAACGCCTGGTCGGCTGCCTCGGGCAGGGCCGC 
GACGACGGCTCCCTCGCGCCCTGCGATGCCCGGCACATGGCCAGCGCGCTGTACCAGTTGTGGCTCGGCGCG 
AGCCTGCTGAGCAAGCTGCACCGCAGCCCGGGACCGCTGGAAACAGCCATGCAGACCACCCGCAGCCTGCTG 
GAAATCTGA