ViewGene
Locus Name:
GeneID:
Location:

GeneID:3898
TrivialName: PA14_46290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46290
PAO1 Ortholog Locus:PA1403
Sequence Length:633
Protein Length:210
Start: 4118551
Stop: 4117919
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04792.1|AE004569_10 (AE004569) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 206/210 (98%), Positives = 207/210 (98%)
Sequence:
ATGAGCGACAAGCGAAACCCGCGTATTTCCTCGCGCAAGCAGCCGCAGCAGGCCCGTTCCAGCGAACTGGTG
GCGAGCATCCTGGAGGCGGCTGTTCAGGTTCTGGCCAGCGAAGGTGCGCAACGTTTTACCACCGCGCGGGTG
GCGGAGCGCGCCGGGGTGAGCATCGGTTCGCTGTACCAGTATTTCCCGAACAAGGCGGCGATCCTCTTCCGC
CTGCAAAGCGACGAGTGGCGGCGCACCACGCGTCTGCTCGGCGAGATCCTCGAGGATACCGCCCGGCCGCCG
CTGGAGCGCTTGCGCCGGCTGGTGCTGGCATTCGTGCGCTCGGAGTGCGAAGAGGCGGCGATACGCGTGGCG
CTGAGCGACGCGGCGCCGCTGTATCGCGACGCCGACGAGGCGCGGGAGGTGAAGGCGGAGGGCGCGCGGGTG
TTCCAGGCGTTTCTCCGGGAGGCCTTGCCGGAGGTCGCCGAGGTCGAGCGCGGCCTGGCCGGCGAATTGCTC
ACCACCACCCTCGGCGCGGTCGGCAAGCAGTTCTCCGAACAGCCACGCAGCGAGGCGGAGATCGAGCGTTAC
GCCGAGGCCCTGGCCGATATGCTCTGCGCCTATCTCGCCGCCCTTGGCGAGCGCTGA
Translation:
MSDKRNPRISSRKQPQQARSSELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYFPNKAAILFR
LQSDEWRRTTRLLGEILEDTARPPLERLRRLVLAFVRSECEEAAIRVALSDAAPLYRDADEAREVKAEGARV
FQAFLREALPEVAEVERGLAGELLTTTLGAVGKQFSEQPRSEAEIERYAEALADMLCAYLAALGER*
AnnotationID:3905GeneID:3898
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 05:05:48
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA1403
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC49495.1| (AP005950) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 214

 Score =  289 bits (740), Expect = 7e-78
 Identities = 150/210 (71%), Positives = 172/210 (81%)

>dbj|BAB52091.1| (AP003007) transcriptional regulator [Mesorhizobium loti]
          Length = 211

 Score =  275 bits (702), Expect = 2e-73
 Identities = 138/210 (65%), Positives = 169/210 (80%)

>gb|AAK23642.1| (AE005841) transcriptional regulator, TetR family [Caulobacter
           crescentus CB15]
          Length = 210

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 7/129 (5%)






 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 51.1 bits (123), Expect = 1e-07
Identities = 20/47 (42%), Positives = 31/47 (65%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7799




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24941




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37394




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3898_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3898
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6134
                           PA1403_tr
                           translation of PA1403
                           210
                           98.09
                           98.57
                           0
                           1006.0
     

     
     
170444
                           gb|AAG04792.1|AE004569_10
                           (AE004569) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           210
                           98.09
                           98.57
                           0
                           1006.0
     

     
     
170445
                           dbj|BAC49495.1|
                           (AP005950) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110]
                           214
                           70.09
                           80.37
                           4
                           740.0
     

     
     
170447
                           emb|CAE28844.1|
                           (BX572604) possible transcriptional regulator, TetR family [Rhodopseudomonas palustris CGA009]
                           210
                           65.71
                           78.57
                           0
                           673.0
     

     
     
170446
                           dbj|BAB52091.1|
                           (AP003007) transcriptional regulator [Mesorhizobium loti]
                           211
                           65.40
                           80.09
                           1
                           702.0
     

     






      

          
GC ORFID: 46900How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1403Glimmer Score: 

          
Start: 835358Stop: 835990

          
Length: 633


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1403 translation of PA1403Homolog Bit Score 392.0

          
Other Homologs:  t_PA1403 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACAAGCGAAACCCGCGTATTTCCTCGCGCAAGCAGCCGCAGCAGGCCCGTTCCAGCGAACTGGTG 
GCGAGCATCCTGGAGGCGGCTGTTCAGGTTCTGGCCAGCGAAGGTGCGCAACGTTTTACCACCGCGCGGGTG 
GCGGAGCGCGCCGGGGTGAGCATCGGTTCGCTGTACCAGTATTTCCCGAACAAGGCGGCGATCCTCTTCCGC 
CTGCAAAGCGACGAGTGGCGGCGCACCACGCGTCTGCTCGGCGAGATCCTCGAGGATACCGCCCGGCCGCCG 
CTGGAGCGCTTGCGCCGGCTGGTGCTGGCATTCGTGCGCTCGGAGTGCGAAGAGGCGGCGATACGCGTGGCG 
CTGAGCGACGCGGCGCCGCTGTATCGCGACGCCGACGAGGCGCGGGAGGTGAAGGCGGAGGGCGCGCGGGTG 
TTCCAGGCGTTTCTCCGGGAGGCCTTGCCGGAGGTCGCCGAGGTCGAGCGCGGCCTGGCCGGCGAATTGCTC 
ACCACCACCCTCGGCGCGGTCGGCAAGCAGTTCTCCGAACAGCCACGCAGCGAGGCGGAGATCGAGCGTTAC 
GCCGAGGCCCTGGCCGATATGCTCTGCGCCTATCTCGCCGCCCTTGGCGAGCGCTGA