ViewGene
Locus Name:
GeneID:
Location:

GeneID:3897
TrivialName: PA14_49810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49810
PAO1 Ortholog Locus:PA1126
Sequence Length:588
Protein Length:195
Start: 4430405
Stop: 4430992
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04515.1|AE004542_11 (AE004542) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 194/195 (99%), Positives = 195/195 (100%)
Sequence:
ATGGAAAACGTCTACAAGACCCCGGAAGCGCCCCTGGTGGAAACCCGCGGCGCGAAGCGGGCGCATTTCTTC
GTCACTTCCCTGGGCAAGATGAGCGTGCTCTTCCTCGTCACCCTGGGGCTGTACGGCGTGTACTGGATGTAC
AAGCACTGGAAGGCCCAGCAACCGCAGATGGAGCGGCGGATCAGCCCGGTATGGCGGGCGATCTTCGGCATC
TTCTTTTTCCACGCCCTCGCCCGGCGGATCCACCAGGCCCTGCCGGAAGAGCGCCAGGCACTATGGAGCCCG
AGCAAGGATGCGACCTGGGCGGTGCTGCTGACGGTCGCGGCGAACCTGATCAGCCACCTCACCGACGTGGTC
CCCGCGCTGGAGCCCTACTCGCTGCCCTCGCTCCTGCTGCTGCTCACGCCGCTTATCCCGATGCGCAACATC
CAGCGCCAGGCCAACCTCGCCAGCGGCGACCCGCAGGGCACGGGCAACGCCGGCTATTCGGGCTACAACCTG
CTGTTCATCGTGCTCGGCGCGCTCTACTGGCTGCTGATCCTGATCGGTTCCGCGGTGATCCTCTTCGGCTCG
TCCCAGGGCTGA
Translation:
MENVYKTPEAPLVETRGAKRAHFFVTSLGKMSVLFLVTLGLYGVYWMYKHWKAQQPQMERRISPVWRAIFGI
FFFHALARRIHQALPEERQALWSPSKDATWAVLLTVAANLISHLTDVVPALEPYSLPSLLLLLTPLIPMRNI
QRQANLASGDPQGTGNAGYSGYNLLFIVLGALYWLLILIGSAVILFGSSQG*
AnnotationID:3904GeneID:3897
AnnotatorUID: danlee
Modification Date/Time: 2004-09-07 13:01:38
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7797




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24939




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3897
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6133
                           PA1126_tr
                           translation of PA1126
                           195
                           99.48
                           99.99
                           0
                           1008.0
     

     
     
170443
                           gb|AAG04515.1|AE004542_11
                           (AE004542) hypothetical protein PA1126 [Pseudomonas aeruginosa PAO1]
                           195
                           99.48
                           99.99
                           0
                           1008.0
     

     






      

          
GC ORFID: 46899How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1126Glimmer Score: 

          
Start: 523503Stop: 522916

          
Length: 588


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1126 translation of PA1126Homolog Bit Score 392.0

          
Other Homologs:  t_PA1126 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAAACGTCTACAAGACCCCGGAAGCGCCCCTGGTGGAAACCCGCGGCGCGAAGCGGGCGCATTTCTTC 
GTCACTTCCCTGGGCAAGATGAGCGTGCTCTTCCTCGTCACCCTGGGGCTGTACGGCGTGTACTGGATGTAC 
AAGCACTGGAAGGCCCAGCAACCGCAGATGGAGCGGCGGATCAGCCCGGTATGGCGGGCGATCTTCGGCATC 
TTCTTTTTCCACGCCCTCGCCCGGCGGATCCACCAGGCCCTGCCGGAAGAGCGCCAGGCACTATGGAGCCCG 
AGCAAGGATGCGACCTGGGCGGTGCTGCTGACGGTCGCGGCGAACCTGATCAGCCACCTCACCGACGTGGTC 
CCCGCGCTGGAGCCCTACTCGCTGCCCTCGCTCCTGCTGCTGCTCACGCCGCTTATCCCGATGCGCAACATC 
CAGCGCCAGGCCAACCTCGCCAGCGGCGACCCGCAGGGCACGGGCAACGCCGGCTATTCGGGCTACAACCTG 
CTGTTCATCGTGCTCGGCGCGCTCTACTGGCTGCTGATCCTGATCGGTTCCGCGGTGATCCTCTTCGGCTCG 
TCCCAGGGCTGA