ViewGene
Locus Name:
GeneID:
Location:

GeneID:3896
TrivialName: PA14_06990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06990
PAO1 Ortholog Locus:PA0537
Sequence Length:609
Protein Length:202
Start: 606856
Stop: 606248
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03926.1|AE004490_6 (AE004490) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 202/202 (100%), Positives = 202/202 (100%)
Sequence:
ATGCCTCGATTCCTCAGAAATGCCCTCCTTCCCGTCCTCGCCCTGCTGCTCAGCGGCTGCGGCTACAACGCC
ATGCAGGCCGGCGACGAACAGGTGAAAGCCGCCTGGTCGGAAGTGCTCAACCAGTACCAGCGGCGCGCCGAC
CTGGTACCCAACCTGGTCAGCACGGTGAAGGGCTATGCCTCCCATGAGGCGTCGGTCCTGACCCAGGTCACC
GAGGCCCGGGCCAAGGTCGGCAGCGTGCAGCTGAACGCCGACCAACTGGACGACGAGCAGGCCGTGCAGCGC
TTCCAGAAGGCCCAGGGCGAACTGAGCTCGGCGCTTTCGCGCCTGCTGGTAGTCACCGAGAACTACCCGCAA
CTGAAGGCCGACGGCCTGTTCAAGGACCTGCTGACCCAACTGGAAGGCACCGAGAACCGCATCGCCGTCGCT
CGCGGCCGCTACGTCAAGTCGGTACAGGAATACAACGTGCTGCTGCGCCAGTTCCCCGGCGTGATCACCGCC
AAGCTGTTCGGCTACAAGCCCAAGGCGAACTTCAGCGTGGAAAACGAAGCGGCCATCTCCACCGCGCCGAAA
GTCGATTTCGGCAACCCGCAACCGGCGCAGTAA
Translation:
MPRFLRNALLPVLALLLSGCGYNAMQAGDEQVKAAWSEVLNQYQRRADLVPNLVSTVKGYASHEASVLTQVT
EARAKVGSVQLNADQLDDEQAVQRFQKAQGELSSALSRLLVVTENYPQLKADGLFKDLLTQLEGTENRIAVA
RGRYVKSVQEYNVLLRQFPGVITAKLFGYKPKANFSVENEAAISTAPKVDFGNPQPAQ*
AnnotationID:3903GeneID:3896
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:00
Gene Name:
Confidence Code:3
GeneProduct:putative exported protein
Cell Localization:()
Synonyms:PA0537
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04011
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE39606.1| (BX640436) putative exported protein [Bordetella parapertussis]
          Length = 209

 Score =  288 bits (738), Expect = 1e-77
 Identities = 150/205 (73%), Positives = 168/205 (81%), Gaps = 5/205 (2%)

>emb|CAE40548.1| (BX640411) putative exported protein [Bordetella pertussis]
          Length = 209

 Score =  287 bits (734), Expect = 3e-77
 Identities = 149/205 (72%), Positives = 168/205 (81%), Gaps = 5/205 (2%)

>emb|CAE35277.1| (BX640452) putative exported protein [Bordetella bronchiseptica]
          Length = 209

 Score =  287 bits (734), Expect = 3e-77
 Identities = 149/205 (72%), Positives = 168/205 (81%), Gaps = 5/205 (2%)








 
Structural Features:
pfam04011, LemA, LemA family. 
CD-Length = 186 residues, 100.0% aligned
Score =  240 bits (613), Expect = 1e-64
Identities = 113/195 (57%), Positives = 133/195 (68%), Gaps = 9/195 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7795




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24937




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33846




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3896_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3896
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6132
                           PA0537_tr
                           translation of PA0537
                           202
                           99.99
                           99.99
                           0
                           1009.0
     

     
     
170412
                           gb|AAG03926.1|AE004490_6
                           (AE004490) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           202
                           99.99
                           99.99
                           0
                           1009.0
     

     
     
170413
                           emb|CAE39606.1|
                           (BX640436) putative exported protein [Bordetella parapertussis]
                           209
                           71.77
                           80.86
                           7
                           742.0
     

     
     
170414
                           emb|CAE40548.1|
                           (BX640411) putative exported protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           209
                           71.29
                           80.86
                           7
                           738.0
     

     
     
170415
                           emb|CAE35277.1|
                           (BX640452) putative exported protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           209
                           71.29
                           80.86
                           7
                           738.0
     

     






      

          
GC ORFID: 46898How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0537Glimmer Score: 

          
Start: 6408198Stop: 6407590

          
Length: 609


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0537 translation of PA0537Homolog Bit Score 393.0

          
Other Homologs:  t_PA0537 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTCGATTCCTCAGAAATGCCCTCCTTCCCGTCCTCGCCCTGCTGCTCAGCGGCTGCGGCTACAACGCC 
ATGCAGGCCGGCGACGAACAGGTGAAAGCCGCCTGGTCGGAAGTGCTCAACCAGTACCAGCGGCGCGCCGAC 
CTGGTACCCAACCTGGTCAGCACGGTGAAGGGCTATGCCTCCCATGAGGCGTCGGTCCTGACCCAGGTCACC 
GAGGCCCGGGCCAAGGTCGGCAGCGTGCAGCTGAACGCCGACCAACTGGACGACGAGCAGGCCGTGCAGCGC 
TTCCAGAAGGCCCAGGGCGAACTGAGCTCGGCGCTTTCGCGCCTGCTGGTAGTCACCGAGAACTACCCGCAA 
CTGAAGGCCGACGGCCTGTTCAAGGACCTGCTGACCCAACTGGAAGGCACCGAGAACCGCATCGCCGTCGCT 
CGCGGCCGCTACGTCAAGTCGGTACAGGAATACAACGTGCTGCTGCGCCAGTTCCCCGGCGTGATCACCGCC 
AAGCTGTTCGGCTACAAGCCCAAGGCGAACTTCAGCGTGGAAAACGAAGCGGCCATCTCCACCGCGCCGAAA 
GTCGATTTCGGCAACCCGCAACCGGCGCAGTAA