ViewGene

Locus Name:
GeneID:
Location:

GeneID:3895
TrivialName: PA14_02100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02100
PAO1 Ortholog Locus:PA0168
Sequence Length:591
Protein Length:196
Start: 191228
Stop: 191818
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03558.1|AE004454_10 (AE004454) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 195/196 (99%), Positives = 195/196 (99%)
Sequence:
ATGCCGAGCACCCTGCAAGGCCTCGCCGAATACCGCGAGGAAATCCGCAAGAGCCGCTTCCACACCATCGCC
GCGCCGGTGGCCGACGAGGACGAGGCGCAGGCGTTCATCGCCGCCCACCGCGACGCTTCCGCCGGACACAAC
TGCTGGGCCTGGAAGTGCGGCGCGCAGTACCGCTTCAGCGACGACGGCGAACCCGGCGGCAGCGCCGGGCGG
CCGATCCTGGCGGCCATCGAGGGACAGGACATGGACTGCGTGGTGGTGCTGGTCAGCCGCTGGTTCGGTGGC
ATCAAGCTCGGCACCGGCGGCCTCGCCCGCGCCTATGGCGGCGGCGCGGCCAAGTGCCTGCAGCAGGCGCCG
CGCAGCGAGCTGGTCGAGCGCTGCCGGGTGCGCTTCGCCTGTGCCTTCGCCGACCACGCGCTGCTCAAGGCG
CGCAGCCTGGCGCTGGGCGCCAGCGTGGCGGCGGAAGACTACGGCGCCGACGGCGTCGTCCTGACCCTGGAG
TTGCCGGTGGCGCGCTTCGAGGCGCTTCAGGCGCTGCTGGTGGACCTCAGCCGAGGCCAGGTGCGGCCGCAG
CGGCTGGACGCCTGA
Translation:
MPSTLQGLAEYREEIRKSRFHTIAAPVADEDEAQAFIAAHRDASAGHNCWAWKCGAQYRFSDDGEPGGSAGR
PILAAIEGQDMDCVVVLVSRWFGGIKLGTGGLARAYGGGAAKCLQQAPRSELVERCRVRFACAFADHALLKA
RSLALGASVAAEDYGADGVVLTLELPVARFEALQALLVDLSRGQVRPQRLDA*
AnnotationID:3902GeneID:3895
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0168
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL53662.1| (AE009679) proline dipeptidase PepQ [Brucella melitensis 16M]
          Length = 205

 Score =  199 bits (505), Expect = 1e-50
 Identities = 97/186 (52%), Positives = 133/186 (71%), Gaps = 1/186 (0%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:7793
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24935
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33531
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3895_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3895

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6131 PA0168_tr translation of PA0168 196 99.48 99.48 0 1009.0
170393 gb|AAG03558.1|AE004454_10 (AE004454) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 196 99.48 99.48 0 1009.0
170394 gb|AAN66220.1|AE016250_2 (AE016776) conserved hypothetical protein TIGR00257 [Pseudomonas putida KT2440] 197 59.89 71.06 4 578.0
170395 gb|AAO54312.1| (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 197 55.83 69.54 1 563.0
170396 emb|CAC41902.1| (AL591783) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] 196 52.04 66.83 2 516.0
GC ORFID: 46897How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0168Glimmer Score:
Start: 5992567Stop: 5993157
Length: 591
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0168 translation of PA0168Homolog Bit Score 393.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3590 (ORF: BLASTX 222.0), t_PA0168 (ORF: GLIMMER)
GC ORF Sequence
ATGCCGAGCACCCTGCAAGGCCTCGCCGAATACCGCGAGGAAATCCGCAAGAGCCGCTTCCACACCATCGCC
GCGCCGGTGGCCGACGAGGACGAGGCGCAGGCGTTCATCGCCGCCCACCGCGACGCTTCCGCCGGACACAAC
TGCTGGGCCTGGAAGTGCGGCGCGCAGTACCGCTTCAGCGACGACGGCGAACCCGGCGGCAGCGCCGGGCGG
CCGATCCTGGCGGCCATCGAGGGACAGGACATGGACTGCGTGGTGGTGCTGGTCAGCCGCTGGTTCGGTGGC
ATCAAGCTCGGCACCGGCGGCCTCGCCCGCGCCTATGGCGGCGGCGCGGCCAAGTGCCTGCAGCAGGCGCCG
CGCAGCGAGCTGGTCGAGCGCTGCCGGGTGCGCTTCGCCTGTGCCTTCGCCGACCACGCGCTGCTCAAGGCG
CGCAGCCTGGCGCTGGGCGCCAGCGTGGCGGCGGAAGACTACGGCGCCGACGGCGTCGTCCTGACCCTGGAG
TTGCCGGTGGCGCGCTTCGAGGCGCTTCAGGCGCTGCTGGTGGACCTCAGCCGAGGCCAGGTGCGGCCGCAG
CGGCTGGACGCCTGA