ViewGene
Locus Name:
GeneID:
Location:

GeneID:3894
TrivialName: PA14_63390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63390
PAO1 Ortholog Locus:PA4799
Sequence Length:579
Protein Length:192
Start: 5655638
Stop: 5655060
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08185.1|AE004893_3 (AE004893) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/192 (98%), Positives = 190/192 (98%)
Sequence:
ATGACCTGCGTCGAGGCCGGGCGAGGCGCGCCGCTGCGTGTGGTGGTGGTCGGCACCAGCGGGGCCGGGAAG
TCGACCTTCTCCGCCGCGCTGGCCGCCAGGCTGGGTTGTACGCATGTCGAACTCGACCGACTCTACTGGGGC
CCCGGCTGGCAAGCCGTGCCCCACGAACGCTTCGAGCACGCAGTGGAGCGGGCGACGACGGCGCCGCGCTGG
GTCGCCGACGGCAACTACAGCGCCGTCCGCGAGTTGCTCTGGGGCCGCGCCACCCATGTGGTATGGCTGAAT
TTCGGGCGCTGGACGGTGTTCTCCCGGGTCCTTCGCCGCACCCTGGCCCGGGGCCTGCTGCGCACCCGCCTG
TCCCACGGCAACCGTGAATCGCTGCGGATGGCGTTCTGCTCCAGGGATTCGATCCTGCTCTGGTCATGGACC
ACCTTCGCAGGCAACCGCCGCAAATACACCGGCCTGCGCGAGGATCCGCGGTTCGCGCATTTGCGCTGGGTG
GAGGTTGGCGAGCCGGGGAGGGTGGGGGAGGTGATCGAGAGGTTGGTGGAAGCCGTGCTCGCACAGTCGCAG
TAG
Translation:
MTCVEAGRGAPLRVVVVGTSGAGKSTFSAALAARLGCTHVELDRLYWGPGWQAVPHERFEHAVERATTAPRW
VADGNYSAVRELLWGRATHVVWLNFGRWTVFSRVLRRTLARGLLRTRLSHGNRESLRMAFCSRDSILLWSWT
TFAGNRRKYTGLREDPRFAHLRWVEVGEPGRVGEVIERLVEAVLAQSQ*
AnnotationID:3901GeneID:3894
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 09:09:20
Gene Name:
Confidence Code:3
GeneProduct:putative adenylate kinase
Cell Localization:()
Synonyms:PA4799
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0563
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO10836.1|AE016805_93 (AE016805) Adenylate kinase [Vibrio vulnificus CMCP6]
          Length = 177

 Score =  137 bits (344), Expect = 5e-32
 Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 2/173 (1%)








 
Structural Features:
COG0563, Adk, Adenylate kinase and related kinases 
[Nucleotide transport and metabolism]
CD-Length = 178 residues,  99.4% aligned
Score =  100 bits (250), Expect = 1e-22







   
Genomic Context:






   
Comment:


















    ReferenceID:7791




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24933




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37689




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3894_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3894
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6130
                           PA4799_tr
                           translation of PA4799
                           192
                           98.95
                           98.95
                           0
                           1010.0
     

     
     
170389
                           gb|AAG08185.1|AE004893_3
                           (AE004893) hypothetical protein PA4799 [Pseudomonas aeruginosa PAO1]
                           192
                           98.95
                           98.95
                           0
                           1010.0
     

     
     
170391
                           gb|AAQ57957.1|
                           (AE016910) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           196
                           37.75
                           48.97
                           17
                           301.0
     

     
     
170390
                           gb|AAF09793.1|AE001882_11
                           (AE001882) hypothetical protein [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           195
                           37.43
                           50.76
                           20
                           334.0
     

     
     
170392
                           emb|CAC80912.1|
                           (AJ251438) NikN protein [Streptomyces tendae]
                           591
                           11.16
                           14.04
                           439
                           242.0
     

     






      

          
GC ORFID: 46896How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4799Glimmer Score: 

          
Start: 4919318Stop: 4918740

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4799 translation of PA4799Homolog Bit Score 393.0

          
Other Homologs:  t_PA4799 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTGCGTCGAGGCCGGGCGAGGCGCGCCGCTGCGTGTGGTGGTGGTCGGCACCAGCGGGGCCGGGAAG 
TCGACCTTCTCCGCCGCGCTGGCCGCCAGGCTGGGTTGTACGCATGTCGAACTCGACCGACTCTACTGGGGC 
CCCGGCTGGCAAGCCGTGCCCCACGAACGCTTCGAGCACGCAGTGGAGCGGGCGACGACGGCGCCGCGCTGG 
GTCGCCGACGGCAACTACAGCGCCGTCCGCGAGTTGCTCTGGGGCCGCGCCACCCATGTGGTATGGCTGAAT 
TTCGGGCGCTGGACGGTGTTCTCCCGGGTCCTTCGCCGCACCCTGGCCCGGGGCCTGCTGCGCACCCGCCTG 
TCCCACGGCAACCGTGAATCGCTGCGGATGGCGTTCTGCTCCAGGGATTCGATCCTGCTCTGGTCATGGACC 
ACCTTCGCAGGCAACCGCCGCAAATACACCGGCCTGCGCGAGGATCCGCGGTTCGCGCATTTGCGCTGGGTG 
GAGGTTGGCGAGCCGGGGAGGGTGGGGGAGGTGATCGAGAGGTTGGTGGAAGCCGTGCTCGCACAGTCGCAG 
TAG