ViewGene

Locus Name:
GeneID:
Location:

GeneID:3893
TrivialName: PA14_56370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56370
PAO1 Ortholog Locus:PA4336
Sequence Length:585
Protein Length:194
Start: 5029128
Stop: 5028544
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07724.1|AE004850_2 (AE004850) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/194 (97%), Positives = 192/194 (98%)
Sequence:
GTGATGGCTGCGAAGAAGATCCTGATGCTGGTCGGCGACTATGCCGAAGACTACGAAACCATGGTCCCGTTC
CAGGCCCTGCAGATGGTGGGCCACCAGGTGCATGCGGTGTGTCCGGACAAGCGGGCCGGGCAAAGCGTGCGC
ACCGCCATCCACGATTTCGAAGGCGACCAGACCTACAGTGAGAAGCCGGGCCACAACTTCACCCTCAATGCC
GACTTTGCCCAGGCCCGCGCCGAGGATTACGATGCCCTCCTGATCCCCGGCGGCCGCGCCCCCGAATACCTG
CGCCTGAACGAGCAGGTGCTGGCTCTGGTGCGTGACTTCGACGCCGCGCGCAAGCCGATCGCCGCGGTCTGC
CATGGCGCCCAGCTGCTGGCCGCCGCCGGCGTCCTGCAAGGGCGGGCGTGCAGCGCCTATCCGGCCTGCGCC
CCGGAGGTGCGGCTGGCCGGCGGCGAGTACGTCGACATTCCGTCGGACCAGGCCCACATCGACGGCCACCTG
GTCACCGCGCCGGCCTGGCCGGCGCATCCGGCGTGGCTGGCGCGCTTCCTTGAGGTGCTCGGCACCCGTATC
AGCCACTGA
Translation:
MMAAKKILMLVGDYAEDYETMVPFQALQMVGHQVHAVCPDKRAGQSVRTAIHDFEGDQTYSEKPGHNFTLNA
DFAQARAEDYDALLIPGGRAPEYLRLNEQVLALVRDFDAARKPIAAVCHGAQLLAAAGVLQGRACSAYPACA
PEVRLAGGEYVDIPSDQAHIDGHLVTAPAWPAHPAWLARFLEVLGTRISH*
AnnotationID:3900GeneID:3893
AnnotatorUID: diggins
Modification Date/Time: 2005-06-08 06:06:19
Gene Name:
Confidence Code:3
GeneProduct:putative amidase/protease
Cell Localization:()
Synonyms:PA4336
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0693,pfam01965
Secondary Functional Category(ies):transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66518.1|AE016280_10 (AE016777) ThiJ/PfpI family protein [Pseudomonas putida KT2440]
          Length = 195

 Score =  331 bits (848), Expect = 2e-90
 Identities = 159/191 (83%), Positives = 170/191 (89%)

>gb|AAN30116.1|AE014420_1 (AE014420) ThiJ/PfpI family protein [Brucella suis 1330]
          Length = 194

 Score =  301 bits (770), Expect = 2e-81
 Identities = 141/193 (73%), Positives = 163/193 (84%)
Structural Features:
COG0693, ThiJ, Putative intracellular protease/amidase
CD-Length = 188 residues, 100.0% aligned
Score =  117 bits (294), Expect = 8e-28
Identities = 75/202 (37%), Positives = 104/202 (51%), Gaps = 24/202 (11%)

pfam01965, DJ-1_PfpI, DJ-1/PfpI family. 
CD-Length = 143 residues,  95.1% aligned
Score = 98.9 bits (246), Expect = 3e-22
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 5/138 (3%)
Genomic Context:
Comment:
ReferenceID:14957
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24931
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36693
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3893_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3893

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6129 PA4336_tr translation of PA4336 194 97.93 98.96 0 1009.0
170365 gb|AAG07724.1|AE004850_2 (AE004850) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 194 97.42 98.96 0 1006.0
170366 gb|AAN66518.1|AE016280_10 (AE016777) ThiJ/PfpI family protein [Pseudomonas putida KT2440] 196 81.12 86.73 3 844.0
170367 emb|CAE41831.1| (BX640415) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 194 78.35 85.56 2 812.0
170370 emb|CAD13944.1| (AL646059) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 194 75.25 83.50 2 793.0
GC ORFID: 46895How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4336Glimmer Score:
Start: 4292804Stop: 4292220
Length: 585
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4336 translation of PA4336Homolog Bit Score 393.0
Other Homologs: t_PA4336 (ORF: GLIMMER)
GC ORF Sequence
GTGATGGCTGCGAAGAAGATCCTGATGCTGGTCGGCGACTATGCCGAAGACTACGAAACCATGGTCCCGTTC
CAGGCCCTGCAGATGGTGGGCCACCAGGTGCATGCGGTGTGTCCGGACAAGCGGGCCGGGCAAAGCGTGCGC
ACCGCCATCCACGATTTCGAAGGCGACCAGACCTACAGTGAGAAGCCGGGCCACAACTTCACCCTCAATGCC
GACTTTGCCCAGGCCCGCGCCGAGGATTACGATGCCCTCCTGATCCCCGGCGGCCGCGCCCCCGAATACCTG
CGCCTGAACGAGCAGGTGCTGGCTCTGGTGCGTGACTTCGACGCCGCGCGCAAGCCGATCGCCGCGGTCTGC
CATGGCGCCCAGCTGCTGGCCGCCGCCGGCGTCCTGCAAGGGCGGGCGTGCAGCGCCTATCCGGCCTGCGCC
CCGGAGGTGCGGCTGGCCGGCGGCGAGTACGTCGACATTCCGTCGGACCAGGCCCACATCGACGGCCACCTG
GTCACCGCGCCGGCCTGGCCGGCGCATCCGGCGTGGCTGGCGCGCTTCCTTGAGGTGCTCGGCACCCGTATC
AGCCACTGA