ViewGene
Locus Name:
GeneID:
Location:

GeneID:3891
TrivialName: PA14_01440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01440
PAO1 Ortholog Locus:PA0118
Sequence Length:588
Protein Length:195
Start: 135915
Stop: 136502
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03508.1|AE004450_3 (AE004450) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 193/195 (98%), Positives = 193/195 (98%)
Sequence:
ATGAGCAAGCAAATCGAGTTCTTCTTCGACTTCGGCAGTCCCACCACTTACCTCGCCTGGACCCAACTGCCG
CGCATCGCCGCCGCCCATGGCGCGAGCATCGCCTGGCGGCCGATGCTGCTGGGCGGCGTGTTCAAGGCCACC
GGCAACCATTCGCCGATCGAGGTGCCGGCCAAGGGGCGCTACACCCTCCACGACCTGGCGCGCTATGCGAAA
CGCTACGGCGTGCCGCTGGCCTTCAACCCGGCCTTCCCGATCAACACCCTGACGCTGATGCGCGGCGCCCAG
GGCTATCTCGGCGGCGAAGGGTTCCATCCCTACCTGAAAGCGGTGTTCGAAGCGTTGTGGGTACGACAGCAG
AACCTCGGCAAGCCCGAGGTGGTCGCCCAGGTGTTGGCGGAGGCCGGGTTCGATCCGGATGAGTTCCTCCGC
CTGGTTGGCGACGAGCAGGTCAAGGAGGGGCTCAAGGCGACCACCGAAGAGGCGGTGCGGCGCGGCGTCTTC
GGCGCGCCCAGCTTCTTCGTCGGCGACCAGTTGTTCTTCGGCCAGGATCGCCTCGATTTCGTCGCCGAGGCC
CTTGCCGGCTGA
Translation:
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAK
RYGVPLAFNPAFPINTLTLMRGAQGYLGGEGFHPYLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDEFLR
LVGDEQVKEGLKATTEEAVRRGVFGAPSFFVGDQLFFGQDRLDFVAEALAG*
AnnotationID:3898GeneID:3891
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:39
Gene Name:
Confidence Code:3
GeneProduct:putative 2-hydroxychromene-2-carboxylate isomerase
Cell Localization:()
Synonyms:PA0118
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3917
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68490.1|AE016481_6 (AE016784) 2-hydroxychromene-2-carboxylate isomerase, putative
           [Pseudomonas putida KT2440]
          Length = 204

 Score =  232 bits (592), Expect = 8e-61
 Identities = 114/195 (58%), Positives = 137/195 (70%), Gaps = 2/195 (1%)








 
Structural Features:
COG3917, NahD, 2-hydroxychromene-2-carboxylate isomerase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 203 residues,  96.6% aligned
Score =  254 bits (649), Expect = 6e-69
Identities = 104/196 (53%), Positives = 126/196 (64%), Gaps = 2/196 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7785




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24927




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33502




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3891_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3891
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6128
                           PA0118_tr
                           translation of PA0118
                           195
                           98.97
                           98.97
                           0
                           1011.0
     

     
     
170356
                           gb|AAG03508.1|AE004450_3
                           (AE004450) hypothetical protein PA0118 [Pseudomonas aeruginosa PAO1]
                           195
                           98.97
                           98.97
                           0
                           1011.0
     

     
     
170357
                           gb|AAN68490.1|AE016481_6
                           (AE016784) 2-hydroxychromene-2-carboxylate isomerase, putative [Pseudomonas putida KT2440]
                           204
                           55.88
                           67.15
                           9
                           591.0
     

     
     
170358
                           gb|AAK22628.1|
                           (AE005740) conserved hypothetical protein [Caulobacter crescentus CB15]
                           209
                           43.06
                           55.02
                           17
                           396.0
     

     
     
170360
                           emb|CAE25466.1|
                           (BX572593) DSBA oxidoreductase [Rhodopseudomonas palustris]
                           202
                           42.07
                           57.92
                           9
                           366.0
     

     






      

          
GC ORFID: 46893How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0118Glimmer Score: 

          
Start: 5937254Stop: 5937841

          
Length: 588


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0118 translation of PA0118Homolog Bit Score 394.0

          
Other Homologs:  t_PA0118 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAGCAAATCGAGTTCTTCTTCGACTTCGGCAGTCCCACCACTTACCTCGCCTGGACCCAACTGCCG 
CGCATCGCCGCCGCCCATGGCGCGAGCATCGCCTGGCGGCCGATGCTGCTGGGCGGCGTGTTCAAGGCCACC 
GGCAACCATTCGCCGATCGAGGTGCCGGCCAAGGGGCGCTACACCCTCCACGACCTGGCGCGCTATGCGAAA 
CGCTACGGCGTGCCGCTGGCCTTCAACCCGGCCTTCCCGATCAACACCCTGACGCTGATGCGCGGCGCCCAG 
GGCTATCTCGGCGGCGAAGGGTTCCATCCCTACCTGAAAGCGGTGTTCGAAGCGTTGTGGGTACGACAGCAG 
AACCTCGGCAAGCCCGAGGTGGTCGCCCAGGTGTTGGCGGAGGCCGGGTTCGATCCGGATGAGTTCCTCCGC 
CTGGTTGGCGACGAGCAGGTCAAGGAGGGGCTCAAGGCGACCACCGAAGAGGCGGTGCGGCGCGGCGTCTTC 
GGCGCGCCCAGCTTCTTCGTCGGCGACCAGTTGTTCTTCGGCCAGGATCGCCTCGATTTCGTCGCCGAGGCC 
CTTGCCGGCTGA