ViewGene
Locus Name:
GeneID:
Location:

GeneID:3890
TrivialName: PA14_00430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00430
PAO1 Ortholog Locus:PA0034
Sequence Length:624
Protein Length:207
Start: 36922
Stop: 36299
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03424.1|AE004443_2 (AE004443) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 207/207 (100%), Positives = 207/207 (100%)
Sequence:
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGAC
GGTTTCACCATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGAC
CTGGCCATCCTGGACATCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAG
CTGGACACCAAGGTCCTGGTCCTGACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGC
GCCATGGGCTTCGTCAGCAAAAGGGAAAACCTCTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGC
TACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACCAGCAGAGCCGCGACAACGAGGCCCGCATGCTG
GAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAACGGCAACACCAACAAGGCCATCGCC
CAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCTGAAACTCAACGCCCAT
TCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA
Translation:
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLK
LDTKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARML
ESLSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI*
AnnotationID:3897GeneID:3890
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 14:02:20
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:bvga
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:virulence factors transcription regulator
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57607.1| (AE016870) DNA-binding response regulator, LuxR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 208

 Score =  241 bits (616), Expect = 2e-63
 Identities = 123/208 (59%), Positives = 160/208 (76%), Gaps = 1/208 (0%)

>gb|AAN66715.1|AE016299_11 (AE016778) DNA-binding response regulator, LuxR family [Pseudomonas
           putida KT2440]
          Length = 207

 Score =  233 bits (594), Expect = 6e-61
 Identities = 120/206 (58%), Positives = 151/206 (73%)

>emb|CAE33486.1| (BX640446) virulence factors transcription regulator [Bordetella
           bronchiseptica]
          Length = 227

 Score =  231 bits (588), Expect = 3e-60
 Identities = 117/206 (56%), Positives = 157/206 (76%), Gaps = 1/206 (0%)








 
Structural Features:
COG2197, CitB, Response regulator containing a CheY-like receiver domain 
and an HTH DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  98.6% aligned
Score =  182 bits (462), Expect = 4e-47
Identities = 88/208 (42%), Positives = 124/208 (59%), Gaps = 3/208 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7783




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24925




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33397




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3890_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3890
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6125
                           PA0034_tr
                           translation of PA0034
                           207
                           99.99
                           99.99
                           0
                           1013.0
     

     
     
170333
                           gb|AAG03424.1|AE004443_2
                           (AE004443) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           207
                           99.99
                           99.99
                           0
                           1013.0
     

     
     
170334
                           gb|AAO57607.1|
                           (AE016870) DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000]
                           208
                           59.13
                           76.92
                           1
                           618.0
     

     
     
170335
                           gb|AAN66715.1|AE016299_11
                           (AE016778) DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440]
                           207
                           57.97
                           72.94
                           0
                           591.0
     

     
     
170340
                           emb|CAA41251.1|
                           (X58355) bvgA product, put. positive regulator [Bordetella bronchiseptica]
                           209
                           55.98
                           75.11
                           2
                           588.0
     

     






      

          
GC ORFID: 46892How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0034Glimmer Score: 

          
Start: 5838259Stop: 5837636

          
Length: 624


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0034 translation of PA0034Homolog Bit Score 394.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6269 (ORF: BLASTX 241.0), t_PA3045 (ORF: BLASTX 228.0), psyr_15may02_Scaffold1_revised_gene352 (ORF: BLASTX 217.0), t_PA3948 (ORF: BLASTX 214.0), t_PA0034 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGAC 
GGTTTCACCATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGAC 
CTGGCCATCCTGGACATCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAG 
CTGGACACCAAGGTCCTGGTCCTGACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGC 
GCCATGGGCTTCGTCAGCAAAAGGGAAAACCTCTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGC 
TACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACCAGCAGAGCCGCGACAACGAGGCCCGCATGCTG 
GAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAACGGCAACACCAACAAGGCCATCGCC 
CAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCTGAAACTCAACGCCCAT 
TCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA