ViewGene

Locus Name:
GeneID:
Location:

GeneID:389
TrivialName: PA14_07680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07680
PAO1 Ortholog Locus:PA0588
Sequence Length:1923
Protein Length:640
Start: 661473
Stop: 659551
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03977.1|AE004495_1 (AE004495) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 640/640 (100%), Positives = 640/640 (100%)
Sequence:
ATGAGCATTTTCAGTCACTTCCAGGAACGCTTCGAAGCGACCCGCCAAGAGGAATATTCCCTCCAGGAATAT
CTCGACCTCTGCAAGCAAGACAAGACAGCCTATGCCTCCGCCGCCGAGCGCCTGCTGATGGCGATCGGCGAG
CCGGAGTTGCTGGACACCTCGGTGGACTCCAGGCTGTCGCGGATCTTCTCCAACAAGGTGATTCGCCGCTAC
CCGGCGTTCGCCGACTTCCACGGCATGGAGGAATGCATCGACCAGATCGTCGCGTTTTTCCGCCACGCGGCC
CAGGGCCTGGAGGAGAAGAAGCAGATCCTTTACCTGCTCGGCCCGGTCGGCGGCGGTAAATCCTCCCTGGCG
GAAAAACTCAAGCAACTCATGGAGAAGGTGCCCTTCTACGCGATCAAGGGCTCGCCGGTCTTCGAGTCGCCG
CTGGGCTTGTTCAACCCCGACGAAGACGGCGCCATCCTCGAGGAGGACTACGGCATCCCGAGGCGCTACCTG
CGCTCGATCATGTCGCCCTGGGCAACCAAGCGCCTCAACGAATTCGGCGGCGACATCAGCCAGTTCCGCGTG
GTCAAGCTGTACCCCTCGATCCTCAACCAGATCGCCATCGCCAAGACCGAGCCCGGCGACGAGAACAACCAG
GACATATCCGCGCTGGTCGGCAAGGTCGACATCCGCAAGCTGGAGGAATACCCGCAGAACGACGCGGACGCC
TACAGCTATTCGGGCGCCCTCTGCCGGGCCAACCAGGGCCTGATGGAATTCGTCGAGATGTTCAAGGCCCCG
ATCAAGGTCCTGCACCCGCTGCTGACCGCGACCCAGGAAGGCAACTACAACAGCACCGAAGGCCTCGGTGCC
CTGCCCTACAGCGGCATCATTCTGGCTCACTCCAACGAGTCGGAATGGCACAGCTTCCGCAACAACAAGAAC
AACGAGGCCTTCATCGACCGCATCTACATCGTCAAGGTGCCGTACTGCCTGCGCGTGGCGGACGAGATCAAG
ATCTACGACAAGTTGCTGGTCAACAGCTCGCTGGCGCATGCCCACTGCGCGCCGGACACCCTGAAGATGCTC
TCGCAGTTCTCCGTGCTGTCGAGGCTGAAAGAGCCGGAAAACTCGAATATCTACTCAAAGATGCGGGTATAT
GACGGCGAAAACCTGAAAGATACCGATCCCAAGGCCAAGTCGATCCAGGAATACCGCGACTCGGCCGGGGTC
GACGAAGGCATGGCCGGGCTTTCCACCCGCTTCGCCTTCAAGATCCTCTCCAAGGTATTCAACTTCGACCCG
CACGAGGTAGCGGCCAACCCGGTGCACCTGCTCTACGTCCTCGAACAGCAGATCGAGCAGGAACAGTTCCAG
CCGGAAACCCGCGAGCGCTACCTGCGTTTCATCAAGGAATACCTGGCGCCGCGCTACGTCGAGTTCATCGGC
AAGGAAATCCAGACCGCCTACCTGGAGTCCTACAGCGAATACGGTCAGAACATCTTCGACCGCTATGTGCTG
TACGCCGACTTCTGGATCCAGGACCAGGAATACCGCGACCCGGAAACCGGCGAGATCCTCAACCGCGCCGCT
CTCAACGAGGAACTGGAGAAGATCGAGAAACCCGCCGGCATCAGCAACCCGAAGGACTTCCGCAACGAGATC
GTCAACTTCGTGCTGCGCGCCCGCGCCGGCAACAACGGCAAGAACCCGAGCTGGCTGTCCTACGAGAAGCTG
CGCGTAGTGATCGAGAAGAAGATGTTCTCCAACACCGAGGACCTGCTTCCGGTCATCAGCTTCAACGCCAAG
GCCAGCAAGGAGGACCAGCAGAAGCACAACGACTTCGTCAAACGCATGGTCGAGCGCGGCTACACCGAGAAG
CAGGTCCGCCTGCTGTCGGAATGGTACCTGCGGGTTCGCAAGTCGCAGTAG
Translation:
MSIFSHFQERFEATRQEEYSLQEYLDLCKQDKTAYASAAERLLMAIGEPELLDTSVDSRLSRIFSNKVIRRY
PAFADFHGMEECIDQIVAFFRHAAQGLEEKKQILYLLGPVGGGKSSLAEKLKQLMEKVPFYAIKGSPVFESP
LGLFNPDEDGAILEEDYGIPRRYLRSIMSPWATKRLNEFGGDISQFRVVKLYPSILNQIAIAKTEPGDENNQ
DISALVGKVDIRKLEEYPQNDADAYSYSGALCRANQGLMEFVEMFKAPIKVLHPLLTATQEGNYNSTEGLGA
LPYSGIILAHSNESEWHSFRNNKNNEAFIDRIYIVKVPYCLRVADEIKIYDKLLVNSSLAHAHCAPDTLKML
SQFSVLSRLKEPENSNIYSKMRVYDGENLKDTDPKAKSIQEYRDSAGVDEGMAGLSTRFAFKILSKVFNFDP
HEVAANPVHLLYVLEQQIEQEQFQPETRERYLRFIKEYLAPRYVEFIGKEIQTAYLESYSEYGQNIFDRYVL
YADFWIQDQEYRDPETGEILNRAALNEELEKIEKPAGISNPKDFRNEIVNFVLRARAGNNGKNPSWLSYEKL
RVVIEKKMFSNTEDLLPVISFNAKASKEDQQKHNDFVKRMVERGYTEKQVRLLSEWYLRVRKSQ*
AnnotationID:398GeneID:389
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 09:09:21
Gene Name:
Confidence Code:3
GeneProduct:putative protein kinase
Cell Localization:()
Synonyms:prkA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2766,pfam06798
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL20210.1| (AE008755) putative Ser protein kinase [Salmonella typhimurium LT2]
          Length = 644

 Score = 1028 bits (2657), Expect = 0.0
 Identities = 498/643 (77%), Positives = 576/643 (89%), Gaps = 4/643 (0%)

>gb|AAG56772.1|AE005401_7 (AE005401) yeaG gene product [Escherichia coli O157:H7 EDL933]
          Length = 644

 Score = 1024 bits (2647), Expect = 0.0
 Identities = 498/643 (77%), Positives = 572/643 (88%), Gaps = 4/643 (0%)

>dbj|BAA15584.1| (D90822) PrkA protein. [Escherichia coli]
          Length = 644

 Score = 1024 bits (2647), Expect = 0.0
 Identities = 498/643 (77%), Positives = 572/643 (88%), Gaps = 4/643 (0%)
Structural Features:
COG2766, PrkA, Putative Ser protein kinase [Signal transduction mechanisms]
CD-Length = 649 residues, 100.0% aligned
Score =  930 bits (2405), Expect = 0.0
Identities = 458/649 (70%), Positives = 524/649 (80%), Gaps = 9/649 (1%)

pfam06798, PrkA, PrkA serine protein kinase.
CD-Length = 612 residues,  99.8% aligned
Score =  929 bits (2403), Expect = 0.0
Identities = 417/620 (67%), Positives = 498/620 (80%), Gaps = 16/620 (2%)
Genomic Context:
Comment:
other possible gene name: yeaG
other possible gene product: putative Ser protein kinase
ReferenceID:781
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17923
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33873
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:389_cdd.html
URL:
Homologs By Global Alignment
Gene ID:389

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
649 PA0588_tr translation of PA0588 640 99.99 99.99 0 3308.0
29654 gb|AAG03977.1|AE004495_1 (AE004495) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 640 99.99 99.99 0 3308.0
29655 gb|AAN66028.1|AE016232_1 (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440] 640 93.12 97.81 0 3129.0
29656 gb|AAO54089.1| (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 640 92.81 97.34 0 3116.0
29657 gb|AAQ59463.1| (AE016916) protein kinase [Chromobacterium violaceum ATCC 12472] 642 80.21 89.40 2 2728.0
GC ORFID: 43391How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0588Glimmer Score:
Start: 6462816Stop: 6460894
Length: 1923
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0588 translation of PA0588Homolog Bit Score 1278.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6759 (ORF: BLASTX 1208.0), t_PA0588 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCATTTTCAGTCACTTCCAGGAACGCTTCGAAGCGACCCGCCAAGAGGAATATTCCCTCCAGGAATAT
CTCGACCTCTGCAAGCAAGACAAGACAGCCTATGCCTCCGCCGCCGAGCGCCTGCTGATGGCGATCGGCGAG
CCGGAGTTGCTGGACACCTCGGTGGACTCCAGGCTGTCGCGGATCTTCTCCAACAAGGTGATTCGCCGCTAC
CCGGCGTTCGCCGACTTCCACGGCATGGAGGAATGCATCGACCAGATCGTCGCGTTTTTCCGCCACGCGGCC
CAGGGCCTGGAGGAGAAGAAGCAGATCCTTTACCTGCTCGGCCCGGTCGGCGGCGGTAAATCCTCCCTGGCG
GAAAAACTCAAGCAACTCATGGAGAAGGTGCCCTTCTACGCGATCAAGGGCTCGCCGGTCTTCGAGTCGCCG
CTGGGCTTGTTCAACCCCGACGAAGACGGCGCCATCCTCGAGGAGGACTACGGCATCCCGAGGCGCTACCTG
CGCTCGATCATGTCGCCCTGGGCAACCAAGCGCCTCAACGAATTCGGCGGCGACATCAGCCAGTTCCGCGTG
GTCAAGCTGTACCCCTCGATCCTCAACCAGATCGCCATCGCCAAGACCGAGCCCGGCGACGAGAACAACCAG
GACATATCCGCGCTGGTCGGCAAGGTCGACATCCGCAAGCTGGAGGAATACCCGCAGAACGACGCGGACGCC
TACAGCTATTCGGGCGCCCTCTGCCGGGCCAACCAGGGCCTGATGGAATTCGTCGAGATGTTCAAGGCCCCG
ATCAAGGTCCTGCACCCGCTGCTGACCGCGACCCAGGAAGGCAACTACAACAGCACCGAAGGCCTCGGTGCC
CTGCCCTACAGCGGCATCATTCTGGCTCACTCCAACGAGTCGGAATGGCACAGCTTCCGCAACAACAAGAAC
AACGAGGCCTTCATCGACCGCATCTACATCGTCAAGGTGCCGTACTGCCTGCGCGTGGCGGACGAGATCAAG
ATCTACGACAAGTTGCTGGTCAACAGCTCGCTGGCGCATGCCCACTGCGCGCCGGACACCCTGAAGATGCTC
TCGCAGTTCTCCGTGCTGTCGAGGCTGAAAGAGCCGGAAAACTCGAATATCTACTCAAAGATGCGGGTATAT
GACGGCGAAAACCTGAAAGATACCGATCCCAAGGCCAAGTCGATCCAGGAATACCGCGACTCGGCCGGGGTC
GACGAAGGCATGGCCGGGCTTTCCACCCGCTTCGCCTTCAAGATCCTCTCCAAGGTATTCAACTTCGACCCG
CACGAGGTAGCGGCCAACCCGGTGCACCTGCTCTACGTCCTCGAACAGCAGATCGAGCAGGAACAGTTCCAG
CCGGAAACCCGCGAGCGCTACCTGCGTTTCATCAAGGAATACCTGGCGCCGCGCTACGTCGAGTTCATCGGC
AAGGAAATCCAGACCGCCTACCTGGAGTCCTACAGCGAATACGGTCAGAACATCTTCGACCGCTATGTGCTG
TACGCCGACTTCTGGATCCAGGACCAGGAATACCGCGACCCGGAAACCGGCGAGATCCTCAACCGCGCCGCT
CTCAACGAGGAACTGGAGAAGATCGAGAAACCCGCCGGCATCAGCAACCCGAAGGACTTCCGCAACGAGATC
GTCAACTTCGTGCTGCGCGCCCGCGCCGGCAACAACGGCAAGAACCCGAGCTGGCTGTCCTACGAGAAGCTG
CGCGTAGTGATCGAGAAGAAGATGTTCTCCAACACCGAGGACCTGCTTCCGGTCATCAGCTTCAACGCCAAG
GCCAGCAAGGAGGACCAGCAGAAGCACAACGACTTCGTCAAACGCATGGTCGAGCGCGGCTACACCGAGAAG
CAGGTCCGCCTGCTGTCGGAATGGTACCTGCGGGTTCGCAAGTCGCAGTAG