ViewGene
Locus Name:
GeneID:
Location:

GeneID:3887
TrivialName: PA14_11940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11940
PAO1 Ortholog Locus:PA4012
Sequence Length:594
Protein Length:197
Start: 1033055
Stop: 1033648
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07399.1|AE004818_5 (AE004818) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGAAGTTGCCGTTGTTTCCCCTCAACGCCGTGCTGTTCCCCGGTTGCCGCCTGGACCTGCAGATCTTCGAG
GCGCGCTACCTGGACATGATCAGCCGCTGCATGAAGCAGGGCACCGGTTTCGGCGTGGTGACCATCGGCGAA
GGGCGGGAGGTCGGCGAAGCGCCGAGCCGCCTGGCGATGGTCGGCTGCGAGGCCTCGGTCCGCGACTGGCAG
CAGCGCCCGAACGGCCTGCTGGGCATCCGCGTGGAGGGCGGTCGGCGTTTCCAGGTGCTGTCGGTGGAGGTC
CAGGCCGACCAGCTCAGCGTTGGCGAGATCGAGTGGTTCGAAGACCTGCCGGAGCAACCCCTGACCTACGAA
CACAACGATCTCGCCGCGTTGCTCAGCGTGCTGGCCGAGCATCCGATGGTGGCCGCGCTGGAGATGGGCGGC
GAGCCCGGCGGCCAGCAGGACCTGGCCAACCAGTTGGCCTACCTGCTGCCGTTCGATACCGAACGCAAGCTC
GAACTGCTCGCCCTGCCCGACGCGCAGATGCAACTGGCGCGGATCCAGGTGCTGCTGGAGCACCTGCAGGGC
GAGTTGGGTATCGACTGA
Translation:
MKLPLFPLNAVLFPGCRLDLQIFEARYLDMISRCMKQGTGFGVVTIGEGREVGEAPSRLAMVGCEASVRDWQ
QRPNGLLGIRVEGGRRFQVLSVEVQADQLSVGEIEWFEDLPEQPLTYEHNDLAALLSVLAEHPMVAALEMGG
EPGGQQDLANQLAYLLPFDTERKLELLALPDAQMQLARIQVLLEHLQGELGID*
AnnotationID:3894GeneID:3887
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 12:12:01
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4012
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2802,pfam02190
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|12159 COG2802, COG2802, Uncharacterized protein, similar to the N-terminal
domain of Lon protease [General function prediction only]
Length = 221
Score =  188 bits (479), Expect = 6e-49
Identities = 78/205 (38%), Positives = 101/205 (49%), Gaps = 8/205 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7777




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24919




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3887
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6122
                           PA4012_tr
                           translation of PA4012
                           197
                           99.99
                           99.99
                           0
                           1011.0
     

     
     
170301
                           gb|AAG07399.1|AE004818_5
                           (AE004818) hypothetical protein PA4012 [Pseudomonas aeruginosa PAO1]
                           197
                           99.99
                           99.99
                           0
                           1011.0
     

     
     
170303
                           gb|AAN70383.1|AE016680_3
                           (AE016792) ATP-dependent protease La domain protein [Pseudomonas putida KT2440]
                           198
                           62.12
                           71.21
                           2
                           590.0
     

     
     
170302
                           gb|AAO54279.1|
                           (AE016858) ATP-dependent protease La domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           197
                           61.42
                           73.60
                           1
                           606.0
     

     






      

          
GC ORFID: 46889How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4012Glimmer Score: 

          
Start: 3920883Stop: 3920290

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4012 translation of PA4012Homolog Bit Score 394.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3478 (ORF: BLASTX 247.0), t_PA4012 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGTTGCCGTTGTTTCCCCTCAACGCCGTGCTGTTCCCCGGTTGCCGCCTGGACCTGCAGATCTTCGAG 
GCGCGCTACCTGGACATGATCAGCCGCTGCATGAAGCAGGGCACCGGTTTCGGCGTGGTGACCATCGGCGAA 
GGGCGGGAGGTCGGCGAAGCGCCGAGCCGCCTGGCGATGGTCGGCTGCGAGGCCTCGGTCCGCGACTGGCAG 
CAGCGCCCGAACGGCCTGCTGGGCATCCGCGTGGAGGGCGGTCGGCGTTTCCAGGTGCTGTCGGTGGAGGTC 
CAGGCCGACCAGCTCAGCGTTGGCGAGATCGAGTGGTTCGAAGACCTGCCGGAGCAACCCCTGACCTACGAA 
CACAACGATCTCGCCGCGTTGCTCAGCGTGCTGGCCGAGCATCCGATGGTGGCCGCGCTGGAGATGGGCGGC 
GAGCCCGGCGGCCAGCAGGACCTGGCCAACCAGTTGGCCTACCTGCTGCCGTTCGATACCGAACGCAAGCTC 
GAACTGCTCGCCCTGCCCGACGCGCAGATGCAACTGGCGCGGATCCAGGTGCTGCTGGAGCACCTGCAGGGC 
GAGTTGGGTATCGACTGA