ViewGene
Locus Name:
GeneID:
Location:

GeneID:3886
TrivialName: PA14_21680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21680
PAO1 Ortholog Locus:PA3273
Sequence Length:600
Protein Length:199
Start: 1878700
Stop: 1879299
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06661.1|AE004749_10 (AE004749) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 198/199 (99%), Positives = 199/199 (100%)
Sequence:
GTGGCGACCAGCAGGGCGCAGGCGCTGGCGAGGGCGAAAAGCGGTTTCATGGCGTACTCCTGTGGGGTGGTC
CTGAGCGGTGGAGCCCGGTCGAGCCGACAAAGTTCAGCCGCAACGCCGGACGGCGACCGATTCGAACCCTCG
CGGCGGGTTGCGGGTCGCACGCATAGAGAGGGTGCGAAGGACCCTCGTCGCTTATGCCGCAGGAGGTATGCC
ATGACTCACGATTGGGATCTGGTCGAACGGTTGCTGCTGGAGGTCCGGCAGTCCGCCCACGAGAACTTCGCC
CCGCGCGCCCATGCCGAACGCCTGGCCGAGGAACGCTCCCAGGCCGGGCAGCGGGTCGGCGACATGGATGCG
TTGAAGCAGAAGGCCGCCGACTACGAGGCGATCCTGCTGGAGGGCGGCTTCATCGAGCCGCGTCCGGAAGAG
CAGGGCGGCAATGGCGAGAACTTCGTCCTCACGCCGCGCGGCGAGCGCCTGCTCGGCCTGATCGGCGGCGAG
ACGCCGAAGGCCGCCGAGGCTCGCCGGCTGCTCGAGGAGAACGGCAGCGAAGCGCTGCACGCCGAGCGCTTC
GACCGTTTCGTCGCCGGGCTCTGA
Translation:
MATSRAQALARAKSGFMAYSCGVVLSGGARSSRQSSAATPDGDRFEPSRRVAGRTHREGAKDPRRLCRRRYA
MTHDWDLVERLLLEVRQSAHENFAPRAHAERLAEERSQAGQRVGDMDALKQKAADYEAILLEGGFIEPRPEE
QGGNGENFVLTPRGERLLGLIGGETPKAAEARRLLEENGSEALHAERFDRFVAGL*
AnnotationID:3893GeneID:3886
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 18:06:00
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3273
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14953




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24917




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3886
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6121
                           PA3273_tr
                           translation of PA3273
                           199
                           99.49
                           99.99
                           0
                           1012.0
     

     
     
170299
                           gb|AAG06661.1|AE004749_10
                           (AE004749) hypothetical protein PA3273 [Pseudomonas aeruginosa PAO1]
                           199
                           98.99
                           99.99
                           0
                           1009.0
     

     
     
170300
                           gb|AAN70102.1|AE016650_1
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           204
                           32.35
                           42.15
                           66
                           291.0
     

     






      

          
GC ORFID: 46888How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3273Glimmer Score: 

          
Start: 3075231Stop: 3074632

          
Length: 600


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3273 translation of PA3273Homolog Bit Score 394.0

          
Other Homologs:  t_PA3273 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCGACCAGCAGGGCGCAGGCGCTGGCGAGGGCGAAAAGCGGTTTCATGGCGTACTCCTGTGGGGTGGTC 
CTGAGCGGTGGAGCCCGGTCGAGCCGACAAAGTTCAGCCGCAACGCCGGACGGCGACCGATTCGAACCCTCG 
CGGCGGGTTGCGGGTCGCACGCATAGAGAGGGTGCGAAGGACCCTCGTCGCTTATGCCGCAGGAGGTATGCC 
ATGACTCACGATTGGGATCTGGTCGAACGGTTGCTGCTGGAGGTCCGGCAGTCCGCCCACGAGAACTTCGCC 
CCGCGCGCCCATGCCGAACGCCTGGCCGAGGAACGCTCCCAGGCCGGGCAGCGGGTCGGCGACATGGATGCG 
TTGAAGCAGAAGGCCGCCGACTACGAGGCGATCCTGCTGGAGGGCGGCTTCATCGAGCCGCGTCCGGAAGAG 
CAGGGCGGCAATGGCGAGAACTTCGTCCTCACGCCGCGCGGCGAGCGCCTGCTCGGCCTGATCGGCGGCGAG 
ACGCCGAAGGCCGCCGAGGCTCGCCGGCTGCTCGAGGAGAACGGCAGCGAAGCGCTGCACGCCGAGCGCTTC 
GACCGTTTCGTCGCCGGGCTCTGA