ViewGene

Locus Name:
GeneID:
Location:

GeneID:3884
TrivialName: PA14_46020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46020
PAO1 Ortholog Locus:PA1424
Sequence Length:612
Protein Length:203
Start: 4094345
Stop: 4093734
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04813.1|AE004572_1 (AE004572) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 199/203 (98%), Positives = 200/203 (98%)
Sequence:
ATGTCACGTATCCGCTGCGAGCGTTGCGCTCGCCCCGCCAGCCACTGCCTCTGCGCATTGATTCCCTCCTTG
CCGTCGCGTACGCGGGTGCTGGTCCTGCAGCACCCCAGCGAGGTCGGGCACGCGCTGAATACCGCAGGGTTG
GCCGTGCTCGGCTTGCGCAATGCGGAATTGCGGGTCGGCGAGCGTTTCGCCGAGGAGACCTGGCGAGTGCCG
GGCTACCGGGCCTGCCTGCTGTTTCCCGGCGAGCAGGCGCGAGCGCTGGCGGGGATGGCCGCCGAGGCCGCC
GGTGAGCCCCTCCTGCTGGTGGTGCCGGACGGCACCTGGCGCAAGGCGCGCAAGCTGCTGCACCTGAACCCG
GCCCTGGCGGCCCTGCCGCGGGTGAGCCTGGCCGAAGGCATGGCGTCGCGTTATCGCCTGCGCAAGGCGCCG
GGAGAGGGCGCGCTGTCGACCATCGAGGCAATCGCCGCGGCGCTCGACGAACTGGAGGCGCCGCGTACCCAC
GAAGCCCTGCTGAAGCCATTCGATGCCCTGATCGAGGGGCAGATCGCGGCGATGGGGGAGGATACCTACCGG
CGCAACCATCTCAACCAGGAGCGCCGCCGCCGATAG
Translation:
MSRIRCERCARPASHCLCALIPSLPSRTRVLVLQHPSEVGHALNTAGLAVLGLRNAELRVGERFAEETWRVP
GYRACLLFPGEQARALAGMAAEAAGEPLLLVVPDGTWRKARKLLHLNPALAALPRVSLAEGMASRYRLRKAP
GEGALSTIEAIAAALDELEAPRTHEALLKPFDALIEGQIAAMGEDTYRRNHLNQERRRR*
AnnotationID:3891GeneID:3884
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 07:07:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1424
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7771
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24913
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37369
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3884_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3884

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6119 PA1424_tr translation of PA1424 203 98.02 98.52 0 1011.0
170267 gb|AAG04813.1|AE004572_1 (AE004572) hypothetical protein PA1424 [Pseudomonas aeruginosa PAO1] 203 98.02 98.52 0 1011.0
170268 gb|AAO55248.1| (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 205 65.85 72.68 8 655.0
170269 gb|AAN70094.1|AE016649_2 (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440] 205 61.46 71.70 8 629.0
170270 emb|CAE32471.1| (BX640443) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 206 59.22 69.90 6 582.0
GC ORFID: 46886How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1424Glimmer Score:
Start: 859564Stop: 860175
Length: 612
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1424 translation of PA1424Homolog Bit Score 394.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7716 (ORF: BLASTX 256.0), t_PA1424 (ORF: GLIMMER)
GC ORF Sequence
ATGTCACGTATCCGCTGCGAGCGTTGCGCTCGCCCCGCCAGCCACTGCCTCTGCGCATTGATTCCCTCCTTG
CCGTCGCGTACGCGGGTGCTGGTCCTGCAGCACCCCAGCGAGGTCGGGCACGCGCTGAATACCGCAGGGTTG
GCCGTGCTCGGCTTGCGCAATGCGGAATTGCGGGTCGGCGAGCGTTTCGCCGAGGAGACCTGGCGAGTGCCG
GGCTACCGGGCCTGCCTGCTGTTTCCCGGCGAGCAGGCGCGAGCGCTGGCGGGGATGGCCGCCGAGGCCGCC
GGTGAGCCCCTCCTGCTGGTGGTGCCGGACGGCACCTGGCGCAAGGCGCGCAAGCTGCTGCACCTGAACCCG
GCCCTGGCGGCCCTGCCGCGGGTGAGCCTGGCCGAAGGCATGGCGTCGCGTTATCGCCTGCGCAAGGCGCCG
GGAGAGGGCGCGCTGTCGACCATCGAGGCAATCGCCGCGGCGCTCGACGAACTGGAGGCGCCGCGTACCCAC
GAAGCCCTGCTGAAGCCATTCGATGCCCTGATCGAGGGGCAGATCGCGGCGATGGGGGAGGATACCTACCGG
CGCAACCATCTCAACCAGGAGCGCCGCCGCCGATAG