ViewGene
Locus Name:
GeneID:
Location:

GeneID:3883
TrivialName: PA14_51990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51990
PAO1 Ortholog Locus:PA0949
Sequence Length:597
Protein Length:198
Start: 4614359
Stop: 4614955
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04338.1|AE004529_4 (AE004529) Trp repressor binding protein WrbA [Pseudomonas aeruginosa PAO1]
Identities = 197/198 (99%), Positives = 197/198 (99%)
Sequence:
TTGAGCAGTCCCTACATCCTGGTGCTGTACTACAGTCGCCATGGCGCTACCGCGGAAATGGCCCGGCAGATC
GCCCGTGGCGTCGAACAAGGCGGCTTCGAAGCGCGCGTACGCACGGTTCCCGCGGTATCCACCGAATGCGAA
GCGGTCGCCCCGGACATCCCCGCGGAGGGGGCGCTGTACGCAACCCTGGAGGACCTGAAGAACTGCGCGGGC
CTGGCCCTCGGCAGCCCGACCCGCTTCGGCAACATGGCTTCCCCGCTGAAATACTTCCTCGACGGTACCAGT
AGCCTGTGGCTGACCGGCGGCCTGGTCGGCAAGCCGGCAGCGGTCTTCACCTCCACCGCCAGCCTGCACGGC
GGCCAGGAGACCACTCAGTTATCGATGCTGTTGCCGTTGCTGCACCACGGCATGCTGGTCCTGGGCATTCCC
TACAGCGAACCCGCCCTGCTGGAAACCCGCGGCGGCGGCACGCCTTACGGCGCCAGCCACTTCGCCGGCGCC
GATGGCAAGCGCAGCCTCGATGAGCACGAACTGACCCTGTGTCGCGCGCTGGGCAAACGCCTGGCGGAAACC
GCCGGCAAGCTGGGGAGTTGA
Translation:
MSSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAG
LALGSPTRFGNMASPLKYFLDGTSSLWLTGGLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIP
YSEPALLETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS*
AnnotationID:3890GeneID:3883
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 14:02:04
Gene Name:wrbA
Confidence Code:2
GeneProduct:Trp repressor binding protein WrbA
Cell Localization:()
Synonyms:PA0949
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0655
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]
       CD-Length = 207 residues,  99.0% aligned
       Score =  138 bits (349), Expect = 4e-34






   
Genomic Context:






   
Comment:


















    ReferenceID:14951




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24911




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3883
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6118
                           PA0949_tr
                           translation of PA0949
                           198
                           99.49
                           99.49
                           0
                           1012.0
     

     
     
170228
                           gb|AAG04338.1|AE004529_4
                           (AE004529) Trp repressor binding protein WrbA [Pseudomonas aeruginosa PAO1]
                           198
                           98.98
                           99.49
                           0
                           1010.0
     

     
     
170229
                           gb|AAN67265.1|AE016353_5
                           (AE016780) trp repressor binding protein [Pseudomonas putida KT2440]
                           201
                           80.59
                           89.05
                           3
                           857.0
     

     
     
170230
                           gb|AAO55206.1|
                           (AE016861) trp repressor binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           201
                           78.10
                           89.55
                           3
                           832.0
     

     
     
170231
                           gb|AAO91076.1|
                           (AE016965) flavoprotein WrbA, protein [Coxiella burnetii RSA 493]
                           199
                           65.32
                           77.88
                           3
                           682.0
     

     






      

          
GC ORFID: 46885How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0949Glimmer Score: 

          
Start: 339548Stop: 338952

          
Length: 597


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0949 translation of PA0949Homolog Bit Score 394.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5936 (ORF: BLASTX 329.0), t_PA0949 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAGCAGTCCCTACATCCTGGTGCTGTACTACAGTCGCCATGGCGCTACCGCGGAAATGGCCCGGCAGATC 
GCCCGTGGCGTCGAACAAGGCGGCTTCGAAGCGCGCGTACGCACGGTTCCCGCGGTATCCACCGAATGCGAA 
GCGGTCGCCCCGGACATCCCCGCGGAGGGGGCGCTGTACGCAACCCTGGAGGACCTGAAGAACTGCGCGGGC 
CTGGCCCTCGGCAGCCCGACCCGCTTCGGCAACATGGCTTCCCCGCTGAAATACTTCCTCGACGGTACCAGT 
AGCCTGTGGCTGACCGGCGGCCTGGTCGGCAAGCCGGCAGCGGTCTTCACCTCCACCGCCAGCCTGCACGGC 
GGCCAGGAGACCACTCAGTTATCGATGCTGTTGCCGTTGCTGCACCACGGCATGCTGGTCCTGGGCATTCCC 
TACAGCGAACCCGCCCTGCTGGAAACCCGCGGCGGCGGCACGCCTTACGGCGCCAGCCACTTCGCCGGCGCC 
GATGGCAAGCGCAGCCTCGATGAGCACGAACTGACCCTGTGTCGCGCGCTGGGCAAACGCCTGGCGGAAACC 
GCCGGCAAGCTGGGGAGTTGA