ViewGene
Locus Name:
GeneID:
Location:

GeneID:3882
TrivialName: PA14_55390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55390
PAO1 Ortholog Locus:PA0691
Sequence Length:603
Protein Length:200
Start: 4917507
Stop: 4916905
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04080.1|AE004505_1 (AE004505) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 197/200 (98%), Positives = 198/200 (99%)
Sequence:
ATGGAAAGTTACTCGAAAGTCGGTATGCAGGAACTTGACCAGCGCCTATCGAAGATCGTCGAAGCCGCACGC
AAGAAACCGGTATCGGTTTATCGATATGGGGCGCCATGGGTCTGGATAGTGTCCCAGGAAGATTGGCAGGGT
GCGCTCAAGGAAGTGTCCAGCTATATACCGCCGGGACATTCCCTGGCATTGCTGAAACCGCAAATAGAAAGT
CTCCTTGGCGAAGAGGCGAAAGTCCTCTTGGCGCTCGCCCGCGAACATGGCATGCAGTTGGCCCCGGAGCCG
CTGATCCATGCGCTGCTGCTGCAACTGCTGTACGCGATTCCCAGCGAGCAGCAGTTGTACGAGCAATTGAAC
TACAACCTGCTGTATCGCTGGTTCGTTGGCCTGGAAATGAAGCAGAAGATCTGGAGTTTTCCGGTTTTCGTC
GGCGATATAACCGTCCTGCTGAACAGCGCGGAGGCGGTAAGGATAATAGGCAGGATTATCGGGGAAGTGATT
TCCGGGGATCTCATGCAGATGCCGGAATTCTCCCTGAACTTCGCCTTGTTGCATACATGGCAAGCGCGCCAT
GGCGGAGCGCGACGGCTGAATATCTAG
Translation:
MESYSKVGMQELDQRLSKIVEAARKKPVSVYRYGAPWVWIVSQEDWQGALKEVSSYIPPGHSLALLKPQIES
LLGEEAKVLLALAREHGMQLAPEPLIHALLLQLLYAIPSEQQLYEQLNYNLLYRWFVGLEMKQKIWSFPVFV
GDITVLLNSAEAVRIIGRIIGEVISGDLMQMPEFSLNFALLHTWQARHGGARRLNI*
AnnotationID:3889GeneID:3882
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 16:04:02
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0691
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3666?






   
Genomic Context:






   
Comment:


















    ReferenceID:7767




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24909




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3882
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6117
                           PA0691_tr
                           translation of PA0691
                           200
                           98.50
                           99.00
                           0
                           1011.0
     

     
     
170227
                           gb|AAG04080.1|AE004505_1
                           (AE004505) hypothetical protein PA0691 [Pseudomonas aeruginosa PAO1]
                           200
                           98.50
                           99.00
                           0
                           1011.0
     

     






      

          
GC ORFID: 46884How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0691Glimmer Score: 

          
Start: 36400Stop: 37002

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0691 translation of PA0691Homolog Bit Score 394.0

          
Other Homologs:  t_PA0691 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAAGTTACTCGAAAGTCGGTATGCAGGAACTTGACCAGCGCCTATCGAAGATCGTCGAAGCCGCACGC 
AAGAAACCGGTATCGGTTTATCGATATGGGGCGCCATGGGTCTGGATAGTGTCCCAGGAAGATTGGCAGGGT 
GCGCTCAAGGAAGTGTCCAGCTATATACCGCCGGGACATTCCCTGGCATTGCTGAAACCGCAAATAGAAAGT 
CTCCTTGGCGAAGAGGCGAAAGTCCTCTTGGCGCTCGCCCGCGAACATGGCATGCAGTTGGCCCCGGAGCCG 
CTGATCCATGCGCTGCTGCTGCAACTGCTGTACGCGATTCCCAGCGAGCAGCAGTTGTACGAGCAATTGAAC 
TACAACCTGCTGTATCGCTGGTTCGTTGGCCTGGAAATGAAGCAGAAGATCTGGAGTTTTCCGGTTTTCGTC 
GGCGATATAACCGTCCTGCTGAACAGCGCGGAGGCGGTAAGGATAATAGGCAGGATTATCGGGGAAGTGATT 
TCCGGGGATCTCATGCAGATGCCGGAATTCTCCCTGAACTTCGCCTTGTTGCATACATGGCAAGCGCGCCAT 
GGCGGAGCGCGACGGCTGAATATCTAG