ViewGene
Locus Name:
GeneID:
Location:

GeneID:3880
TrivialName: PA14_03100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03100
PAO1 Ortholog Locus:
Sequence Length:642
Protein Length:213
Start: 273365
Stop: 272724
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03640.1|AE004463_5 (AE004463) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 183/213 (85%), Positives = 194/213 (91%)
Sequence:
ATGAACGACTACATCGCCCGGCTGCGCGAGAAATACGACGACCATTTCGGCTGTGCGCCGAGCATCGTCCTG
GACTGCCGTGACTTCTGGAGGCACTGCGTGACGGCACCGGAAATGGCGGTGTTCGGCTACCGCCTGGAAAGC
AGCCGGCGCCCGCACCACGTGGTGATCACCGCGGGGATGAGCCAGGCACGGATGCACTTCGCGCCCTATATG
GGCAGCGCGCGCTGGTCCAGCGAGCTGATCTGCTACCTTGACGTCCTCGGCGGTGAGGACCTGCGCCACCTG
CAGTGGCTCGCCGGCCTGCCGTTCCACGAACGCCTGGCCCTCGGCCACGGACACAGCGTGGCATTCGGTTTC
CCGCTCTACGAGCACAGCCTGCTGCGTCACTTCCTTCTCCTGCCGACCCCGCTGGGCGAAGATGCCGCCCTG
TTCGACGGTTTCGACCTGTCCGCCCATCCGGTCGACCTGCTCTGGGTCGTGCCGCTAACCGAGCAGGAATAC
CAGGTGAAAGTGAACAAGCACCTGGAAGGCATCGCCGAAGTGCTGAACGACGCCGGACATCCGCTCAGCCTC
GACCGGCATCGCCATTGCTACGTCACCGGCCTACGTCCGGAAGGGTTCGAGCGGATACTGCATTAG
Translation:
MNDYIARLREKYDDHFGCAPSIVLDCRDFWRHCVTAPEMAVFGYRLESSRRPHHVVITAGMSQARMHFAPYM
GSARWSSELICYLDVLGGEDLRHLQWLAGLPFHERLALGHGHSVAFGFPLYEHSLLRHFLLLPTPLGEDAAL
FDGFDLSAHPVDLLWVVPLTEQEYQVKVNKHLEGIAEVLNDAGHPLSLDRHRHCYVTGLRPEGFERILH*
AnnotationID:3887GeneID:3880
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 19:07:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7763




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24905




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3880
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6115
                           PA0251_tr
                           translation of PA0251
                           213
                           85.91
                           91.07
                           0
                           1016.0
     

     
     
170202
                           gb|AAG03640.1|AE004463_5
                           (AE004463) hypothetical protein PA0251 [Pseudomonas aeruginosa PAO1]
                           213
                           85.91
                           91.07
                           0
                           1016.0
     

     






      

          
GC ORFID: 46882How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0251Glimmer Score: 

          
Start: 6074706Stop: 6074065

          
Length: 642


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0251 translation of PA0251Homolog Bit Score 395.0

          
Other Homologs:  t_PA0251 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACTACATCGCCCGGCTGCGCGAGAAATACGACGACCATTTCGGCTGTGCGCCGAGCATCGTCCTG 
GACTGCCGTGACTTCTGGAGGCACTGCGTGACGGCACCGGAAATGGCGGTGTTCGGCTACCGCCTGGAAAGC 
AGCCGGCGCCCGCACCACGTGGTGATCACCGCGGGGATGAGCCAGGCACGGATGCACTTCGCGCCCTATATG 
GGCAGCGCGCGCTGGTCCAGCGAGCTGATCTGCTACCTTGACGTCCTCGGCGGTGAGGACCTGCGCCACCTG 
CAGTGGCTCGCCGGCCTGCCGTTCCACGAACGCCTGGCCCTCGGCCACGGACACAGCGTGGCATTCGGTTTC 
CCGCTCTACGAGCACAGCCTGCTGCGTCACTTCCTTCTCCTGCCGACCCCGCTGGGCGAAGATGCCGCCCTG 
TTCGACGGTTTCGACCTGTCCGCCCATCCGGTCGACCTGCTCTGGGTCGTGCCGCTAACCGAGCAGGAATAC 
CAGGTGAAAGTGAACAAGCACCTGGAAGGCATCGCCGAAGTGCTGAACGACGCCGGACATCCGCTCAGCCTC 
GACCGGCATCGCCATTGCTACGTCACCGGCCTACGTCCGGAAGGGTTCGAGCGGATACTGCATTAG