ViewGene
Locus Name:
GeneID:
Location:

GeneID:388
TrivialName: PA14_16180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16180
PAO1 Ortholog Locus:PA3729
Sequence Length:2067
Protein Length:688
Start: 1376662
Stop: 1378728
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07116.1|AE004792_1 (AE004792) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 686/688 (99%), Positives = 688/688 (100%)
Sequence:
ATGGATATGACGTCGTTGATGCCCCTCCTGCTGGGAGTGGGCCTGGTCGTTCTGCTGGTCGTGGGCCTGCTG
GCCCTGTTCAAGGCCTTCTACATCAAGGTCCCGCAAGGCACCGCGCTGATCGTCAACGACATGTCGTCGACG
CCCAAGGTGCATTTCACCGGTGCGCTGGTCTATCCGGTGATCCACCTGAAGGAGTTCATGCGCATCTCGCTG
ATCACCCTGGAGGTCGACCGGCGCGGCAAGGACGGCCTGATCTGCCGCGACAACATGCGCGCGGACATCACC
GTTGCCTTCTACCTGCGGGTCAACGAGACCCAGGACGACGTGCTCAAGGTGGCCAAGGCCATCGGCGTCGAC
CGTGCTTCCGACCGTTCGGCGGTGAACGAGCTGTTCAATGCCAAGTTCTCCGAGGCGCTGAAGACCGTCGGC
AAGCAGTTCGACTTCGTCCAGCTGTTCGAGAATCGCCAGGACTTCCGTGACCGCATCATCGAGGTGATCGGC
AACGACCTGAACGGCTACGTCCTGGAAGACGTCGCCATCGACTACCTGGAGCAGACCGCGAAGAACTCGCTG
GACCCGAGCAACATCCTCGATGCCGAGGGCATCCGCAAGATCACCGAGCTGACCGCCACCCAGAACGTCATC
ACCAACGAACTGGAGCGCAACGAAGAGCTGGCGATCAAGAAGAAGAACGTCGAGACCCGCGAGGCGGCCCTG
GCCCTGGAGCGCCAGCAGGCTGACGCCGAGGCCCGGCAGAAGCGCGAGATCGAGACCATCCGTGCCCGCGAG
GAAGCGGAAACCGCGCGGGTCAAGGAAGAAGAGCGGCTGAAGGCCGAGCAGGCGCGGATCCAGGCGCAGCAG
GAAATCGACGTGCGCACCGAGAACCACCAGCGCGAGGTCGAGGTGGCGCAGCAGAACCGCCAGCGCGCGGTG
GTCATCGAGGTGGAGAAGGTCACCCGCGCCAAGGACCTGGAGATCGTCGCCCGCGAGCGTGAGGTGGAGCTG
CAGAAGATCGAGAAGGAAAAGGCGCTGGAAGAGCAGCGCAAGAACATCGCCAATGTGATTCGCGAGCGCGTC
GCGGTGGAAAAGACCGTGGCCCAGGAGGAGGAGCGGATCAAGGAGGTGCGCGAGGTTTCCGAGGCCGAGCGG
GTCAAGCAGGTGATCCTGCTGCAGGCCCAGGCGGAAGCCGAGCAGGAGCTGGTACGCCAGGTCAAGCAGGCG
GAAGCCGACGAGGCCCGCTCCAAGCACAAGGCGGTGGAAATCAACACCATGGCGCAGGCCGAGCTGGAAGCG
GCGTCGAAGCAGGCCGAGGCGAAGAAGCGTCTGGCCGAGGGCGTCGAGGCCGAGCGCGCAGCGCCGGGCCTG
GCCGATGCGCGGGTGCTGGAAGTCACCGCTGCGGCTAAGGAAAAGGATGGCTTGGCAGCGGCGCGGGTACGT
GCCGAACAACTGATCGCCGAAGCCAGGGGCGACGAGGAGCGCGGCCTGGCCGACGCCCGGGTGCTCGAGGCG
CAGGCCGCAGCCAAGGAGAAGGACGGCCTGGCCGAAGCCAAGGTGCTGGCCGAGAAGCTCGGCGCCCAGGCG
CGCGGCGAGGAGCAGCTCGGCGCGGCCAAGGCCAAGGCCACCAAGGACCAGGGCAGCGCGGAAGCGGAAGTA
CTGCTGCAGCGCCTGAATGCCGAGGCTGAGGGGCTTGGCAAGAAGTTCGGCGCCCTGGATGCCCTCAGCGAC
AGCGCTCGCCAGCACGAAGAGTTCCGCATGCAGCTGGAGAAGAGCTTCGAGGAGGCCATGGCGGCCATCGCC
GCGAACAAGGACATCGCCAAGGACCAGGCCGAGGTGCTCGCCACCGCGCTGGGCAAGGCGAACATCGAGATC
GTCGGCGGCGAGGGCGACTTCTTCAACTCCTTCGCCAAGTCGCTGTCGGTGGGCAAGGCCATCGAAGGTGTG
GTCGGCAAGAGCCCGGTGGTGCAGGACGTCCTCGCCCGTCTGCTCAACGGCCGTGGCGCAGCCGCTGCGGTG
GTGCCGGAACGCAAGAGCGGCCACGAGAACGAGCCGGCGGCGGAAGTCTGA
Translation:
MDMTSLMPLLLGVGLVVLLVVGLLALFKAFYIKVPQGTALIVNDMSSTPKVHFTGALVYPVIHLKEFMRISL
ITLEVDRRGKDGLICRDNMRADITVAFYLRVNETQDDVLKVAKAIGVDRASDRSAVNELFNAKFSEALKTVG
KQFDFVQLFENRQDFRDRIIEVIGNDLNGYVLEDVAIDYLEQTAKNSLDPSNILDAEGIRKITELTATQNVI
TNELERNEELAIKKKNVETREAALALERQQADAEARQKREIETIRAREEAETARVKEEERLKAEQARIQAQQ
EIDVRTENHQREVEVAQQNRQRAVVIEVEKVTRAKDLEIVAREREVELQKIEKEKALEEQRKNIANVIRERV
AVEKTVAQEEERIKEVREVSEAERVKQVILLQAQAEAEQELVRQVKQAEADEARSKHKAVEINTMAQAELEA
ASKQAEAKKRLAEGVEAERAAPGLADARVLEVTAAAKEKDGLAAARVRAEQLIAEARGDEERGLADARVLEA
QAAAKEKDGLAEAKVLAEKLGAQARGEEQLGAAKAKATKDQGSAEAEVLLQRLNAEAEGLGKKFGALDALSD
SARQHEEFRMQLEKSFEEAMAAIAANKDIAKDQAEVLATALGKANIEIVGGEGDFFNSFAKSLSVGKAIEGV
VGKSPVVQDVLARLLNGRGAAAAVVPERKSGHENEPAAEV*
AnnotationID:397GeneID:388
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 08:08:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3729
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB41272.1| (AL939116) putative secreted protein [Streptomyces coelicolor
           A3(2)]
          Length = 677

 Score =  532 bits (1370), Expect = e-150
 Identities = 305/651 (46%), Positives = 422/651 (64%), Gaps = 56/651 (8%)

>gb|AAL22073.1| (AE008847) putative membrane protein [Salmonella typhimurium LT2]
          Length = 559

 Score =  191 bits (485), Expect = 1e-47
 Identities = 125/445 (28%), Positives = 232/445 (52%), Gaps = 32/445 (7%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:779




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17921




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31826




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:388_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:388
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
648
                           PA3729_tr
                           translation of PA3729
                           688
                           99.70
                           99.99
                           0
                           3308.0
     

     
     
29652
                           gb|AAG07116.1|AE004792_1
                           (AE004792) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           688
                           99.70
                           99.99
                           0
                           3308.0
     

     
     
29653
                           emb|CAB41272.1|
                           (AL939116) putative secreted protein [Streptomyces coelicolor A3(2)]
                           736
                           44.42
                           61.95
                           107
                           1471.0
     

     






      

          
GC ORFID: 43390How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3729Glimmer Score: 

          
Start: 3577275Stop: 3575209

          
Length: 2067


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3729 translation of PA3729Homolog Bit Score 1278.0

          
Other Homologs:  t_PA3729 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATATGACGTCGTTGATGCCCCTCCTGCTGGGAGTGGGCCTGGTCGTTCTGCTGGTCGTGGGCCTGCTG 
GCCCTGTTCAAGGCCTTCTACATCAAGGTCCCGCAAGGCACCGCGCTGATCGTCAACGACATGTCGTCGACG 
CCCAAGGTGCATTTCACCGGTGCGCTGGTCTATCCGGTGATCCACCTGAAGGAGTTCATGCGCATCTCGCTG 
ATCACCCTGGAGGTCGACCGGCGCGGCAAGGACGGCCTGATCTGCCGCGACAACATGCGCGCGGACATCACC 
GTTGCCTTCTACCTGCGGGTCAACGAGACCCAGGACGACGTGCTCAAGGTGGCCAAGGCCATCGGCGTCGAC 
CGTGCTTCCGACCGTTCGGCGGTGAACGAGCTGTTCAATGCCAAGTTCTCCGAGGCGCTGAAGACCGTCGGC 
AAGCAGTTCGACTTCGTCCAGCTGTTCGAGAATCGCCAGGACTTCCGTGACCGCATCATCGAGGTGATCGGC 
AACGACCTGAACGGCTACGTCCTGGAAGACGTCGCCATCGACTACCTGGAGCAGACCGCGAAGAACTCGCTG 
GACCCGAGCAACATCCTCGATGCCGAGGGCATCCGCAAGATCACCGAGCTGACCGCCACCCAGAACGTCATC 
ACCAACGAACTGGAGCGCAACGAAGAGCTGGCGATCAAGAAGAAGAACGTCGAGACCCGCGAGGCGGCCCTG 
GCCCTGGAGCGCCAGCAGGCTGACGCCGAGGCCCGGCAGAAGCGCGAGATCGAGACCATCCGTGCCCGCGAG 
GAAGCGGAAACCGCGCGGGTCAAGGAAGAAGAGCGGCTGAAGGCCGAGCAGGCGCGGATCCAGGCGCAGCAG 
GAAATCGACGTGCGCACCGAGAACCACCAGCGCGAGGTCGAGGTGGCGCAGCAGAACCGCCAGCGCGCGGTG 
GTCATCGAGGTGGAGAAGGTCACCCGCGCCAAGGACCTGGAGATCGTCGCCCGCGAGCGTGAGGTGGAGCTG 
CAGAAGATCGAGAAGGAAAAGGCGCTGGAAGAGCAGCGCAAGAACATCGCCAATGTGATTCGCGAGCGCGTC 
GCGGTGGAAAAGACCGTGGCCCAGGAGGAGGAGCGGATCAAGGAGGTGCGCGAGGTTTCCGAGGCCGAGCGG 
GTCAAGCAGGTGATCCTGCTGCAGGCCCAGGCGGAAGCCGAGCAGGAGCTGGTACGCCAGGTCAAGCAGGCG 
GAAGCCGACGAGGCCCGCTCCAAGCACAAGGCGGTGGAAATCAACACCATGGCGCAGGCCGAGCTGGAAGCG 
GCGTCGAAGCAGGCCGAGGCGAAGAAGCGTCTGGCCGAGGGCGTCGAGGCCGAGCGCGCAGCGCCGGGCCTG 
GCCGATGCGCGGGTGCTGGAAGTCACCGCTGCGGCTAAGGAAAAGGATGGCTTGGCAGCGGCGCGGGTACGT 
GCCGAACAACTGATCGCCGAAGCCAGGGGCGACGAGGAGCGCGGCCTGGCCGACGCCCGGGTGCTCGAGGCG 
CAGGCCGCAGCCAAGGAGAAGGACGGCCTGGCCGAAGCCAAGGTGCTGGCCGAGAAGCTCGGCGCCCAGGCG 
CGCGGCGAGGAGCAGCTCGGCGCGGCCAAGGCCAAGGCCACCAAGGACCAGGGCAGCGCGGAAGCGGAAGTA 
CTGCTGCAGCGCCTGAATGCCGAGGCTGAGGGGCTTGGCAAGAAGTTCGGCGCCCTGGATGCCCTCAGCGAC 
AGCGCTCGCCAGCACGAAGAGTTCCGCATGCAGCTGGAGAAGAGCTTCGAGGAGGCCATGGCGGCCATCGCC 
GCGAACAAGGACATCGCCAAGGACCAGGCCGAGGTGCTCGCCACCGCGCTGGGCAAGGCGAACATCGAGATC 
GTCGGCGGCGAGGGCGACTTCTTCAACTCCTTCGCCAAGTCGCTGTCGGTGGGCAAGGCCATCGAAGGTGTG 
GTCGGCAAGAGCCCGGTGGTGCAGGACGTCCTCGCCCGTCTGCTCAACGGCCGTGGCGCAGCCGCTGCGGTG 
GTGCCGGAACGCAAGAGCGGCCACGAGAACGAGCCGGCGGCGGAAGTCTGA