ViewGene

Locus Name:
GeneID:
Location:

GeneID:3879
TrivialName: PA14_11320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11320
PAO1 Ortholog Locus:PA4063
Sequence Length:591
Protein Length:196
Start: 985204
Stop: 984614
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07450.1|AE004822_10 (AE004822) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 195/196 (99%), Positives = 196/196 (100%)
Sequence:
ATGCGCCCACTGCTGTTAGCCCTCGTCTTGCTGCCGTTCGCCGCCCAGGCCCATGACGACCACGACCATGAC
CACGCCCACGGCAGCCTGGGCAAGCACGAGCACGGCGTCGCCCAGTTGAACGTGGCGCTGGACGGCAAGACC
CTCGAACTGGAGCTGGACAGCCCGGCGATGAACCTGGTCGGTTTCGAACACGCCGCCAGCACCGACGCGGAC
AAGGCCGCCGTGGCCAAGGCCCGCGCGCAACTGGAAAAACCGCTGGAGCTGTTCGCCCTGCCGGTCACCGCC
GGCTGCTCGGTGGCCAGCCAGGAACTGCGGAGTCCGCTGTTCGGCGACAAGGCGCCGGCCCACGCGCACAAG
GAGAAGGCAGGCCACGAACATGAACATGAACACGAACACGAAAACGGTCATGCCGATATCCACGCCCATTAC
CAGCTCAGTTGCGAGAAGCCCGAGCTGCTCAAGCTGCTGACCCTCGCCGAGTTCTTCAAGCGCTTCCCCGCC
ACCCAGAAAATTCAGGTACAACTGATCGGTCCCGACGGCCAGAAAGGCGCCGACCTGGCCCCGGCCAGCGCC
GAGCTGAAGCTGTAG
Translation:
MRPLLLALVLLPFAAQAHDDHDHDHAHGSLGKHEHGVAQLNVALDGKTLELELDSPAMNLVGFEHAASTDAD
KAAVAKARAQLEKPLELFALPVTAGCSVASQELRSPLFGDKAPAHAHKEKAGHEHEHEHEHENGHADIHAHY
QLSCEKPELLKLLTLAEFFKRFPATQKIQVQLIGPDGQKGADLAPASAELKL*
AnnotationID:3886GeneID:3879
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4063
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7761
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24903
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3879

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6114 PA4063_tr translation of PA4063 196 99.48 99.99 0 1016.0
170199 gb|AAG07450.1|AE004822_10 (AE004822) hypothetical protein PA4063 [Pseudomonas aeruginosa PAO1] 196 99.48 99.99 0 1016.0
170200 gb|AAN66136.1|AE016242_4 (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440] 199 64.82 71.35 9 626.0
170201 gb|AAO54225.1| (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 201 55.22 66.66 11 527.0
GC ORFID: 46881How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4063Glimmer Score:
Start: 3968733Stop: 3969323
Length: 591
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4063 translation of PA4063Homolog Bit Score 395.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1331 (ORF: BLASTX 202.0), t_PA4063 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCCACTGCTGTTAGCCCTCGTCTTGCTGCCGTTCGCCGCCCAGGCCCATGACGACCACGACCATGAC
CACGCCCACGGCAGCCTGGGCAAGCACGAGCACGGCGTCGCCCAGTTGAACGTGGCGCTGGACGGCAAGACC
CTCGAACTGGAGCTGGACAGCCCGGCGATGAACCTGGTCGGTTTCGAACACGCCGCCAGCACCGACGCGGAC
AAGGCCGCCGTGGCCAAGGCCCGCGCGCAACTGGAAAAACCGCTGGAGCTGTTCGCCCTGCCGGTCACCGCC
GGCTGCTCGGTGGCCAGCCAGGAACTGCGGAGTCCGCTGTTCGGCGACAAGGCGCCGGCCCACGCGCACAAG
GAGAAGGCAGGCCACGAACATGAACATGAACACGAACACGAAAACGGTCATGCCGATATCCACGCCCATTAC
CAGCTCAGTTGCGAGAAGCCCGAGCTGCTCAAGCTGCTGACCCTCGCCGAGTTCTTCAAGCGCTTCCCCGCC
ACCCAGAAAATTCAGGTACAACTGATCGGTCCCGACGGCCAGAAAGGCGCCGACCTGGCCCCGGCCAGCGCC
GAGCTGAAGCTGTAG