ViewGene
Locus Name:
GeneID:
Location:

GeneID:3877
TrivialName: PA14_18930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18930
PAO1 Ortholog Locus:PA3490
Sequence Length:567
Protein Length:188
Start: 1633776
Stop: 1633210
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06878.1|AE004770_3 (AE004770) probable ferredoxin [Pseudomonas aeruginosa PAO1]
Identities = 187/188 (99%), Positives = 187/188 (99%)
Sequence:
ATGAACGGCGTGTTCCTGGCGATCGGCGCGCTGCTGCCGATCTGCCTGGCCGGCGGTGCGCTGCTCGGCTAT
GCGGCGGTGCGCTTCCGCGTCCAGGGCGACCCGGTCGCCGAGCAGGTCAACGCCCTGTTGCCGCAGACCCAG
TGCGGCCAGTGTGGCTACCCCGGCTGCAAGCCCTACGCCGAGGCGATCGCCGCCGGCGACAAGATCAACAAG
TGCCCGCCGGGCGGCGAAGCGACCATCCGCGCCCTCGCCGACCTGCTCGACCTGGAGCCCGAGCCGCTCGAC
GCCGCCGAGGAAACCCCGCCGCGGGTAGCCTACATCCGCGAGGCCGAATGCATCGGCTGCACCAAGTGCATC
CAGGCCTGCCCGGTGGACGCCATCGTCGGCGCCGCACGGCTGATGCACACGGTGATCGCCGACGAATGCACC
GGTTGCGACCTGTGCCTGGAGCCCTGTCCGGTGGACTGCATCGAGATGCGCGAAACCCCAGACGACGTGCGC
CACTGGAAATGGCCGCAGCCGTCGCCGCGACTGATCGCCAGCGACCGGGAGCGAGCGGCATGA
Translation:
MNGVFLAIGALLPICLAGGALLGYAAVRFRVQGDPVAEQVNALLPQTQCGQCGYPGCKPYAEAIAAGDKINK
CPPGGEATIRALADLLDLEPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAIVGAARLMHTVIADECT
GCDLCLEPCPVDCIEMRETPDDVRHWKWPQPSPRLIASDRERAA*
AnnotationID:3884GeneID:3877
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 12:12:46
Gene Name:
Confidence Code:3
GeneProduct:putative NADH:ubiquinone oxidoreductase, subunit RnfB
Cell Localization:()
Synonyms:rnfB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative electron transport complex protein rnfB
Functional Category Confidence Code:5
COGs:COG2878
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC60366.1| (AP005080) RnfB-related protein [Vibrio parahaemolyticus]
          Length = 198

 Score =  233 bits (595), Expect = 3e-61
 Identities = 105/173 (60%), Positives = 129/173 (74%), Gaps = 1/173 (0%)

>emb|CAC91051.1| (AJ414151) putative iron-sulfur protein [Yersinia pestis CO92]
          Length = 188

 Score =  232 bits (591), Expect = 1e-60
 Identities = 109/176 (61%), Positives = 133/176 (75%), Gaps = 4/176 (2%)

>dbj|BAA15390.1| (D90807) Ferredoxin II. [Escherichia coli]
          Length = 192

 Score =  224 bits (571), Expect = 2e-58
 Identities = 108/179 (60%), Positives = 139/179 (77%), Gaps = 10/179 (5%)








 
Structural Features:
COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB 
[Energy production and conversion]
CD-Length = 198 residues,  97.0% aligned
Score =  236 bits (602), Expect = 2e-63
Identities = 115/192 (59%), Positives = 138/192 (71%), Gaps = 4/192 (2%)








   
Genomic Context:






   
Comment:
other possible gene name: ydgM


















    ReferenceID:7757




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24899




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32054




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3877_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3877
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6112
                           PA3490_tr
                           translation of PA3490
                           188
                           99.46
                           99.46
                           0
                           1015.0
     

     
     
170138
                           gb|AAG06878.1|AE004770_3
                           (AE004770) probable ferredoxin [Pseudomonas aeruginosa PAO1]
                           188
                           99.46
                           99.46
                           0
                           1015.0
     

     
     
170151
                           gb|AAG56617.1|AE005386_8
                           (AE005386) orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
                           197
                           55.83
                           73.09
                           14
                           577.0
     

     
     
170152
                           gb|AAC74700.1|
                           (AE000258) orf, hypothetical protein [Escherichia coli K12]
                           197
                           55.83
                           73.09
                           14
                           576.0
     

     
     
170153
                           dbj|BAA15413.1|
                           (D90808) Ferredoxin II. [Escherichia coli]
                           197
                           55.83
                           73.09
                           14
                           576.0
     

     






      

          
GC ORFID: 46879How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3490Glimmer Score: 

          
Start: 3320158Stop: 3320724

          
Length: 567


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3490 translation of PA3490Homolog Bit Score 395.0

          
Other Homologs:  t_PA3490 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGGCGTGTTCCTGGCGATCGGCGCGCTGCTGCCGATCTGCCTGGCCGGCGGTGCGCTGCTCGGCTAT 
GCGGCGGTGCGCTTCCGCGTCCAGGGCGACCCGGTCGCCGAGCAGGTCAACGCCCTGTTGCCGCAGACCCAG 
TGCGGCCAGTGTGGCTACCCCGGCTGCAAGCCCTACGCCGAGGCGATCGCCGCCGGCGACAAGATCAACAAG 
TGCCCGCCGGGCGGCGAAGCGACCATCCGCGCCCTCGCCGACCTGCTCGACCTGGAGCCCGAGCCGCTCGAC 
GCCGCCGAGGAAACCCCGCCGCGGGTAGCCTACATCCGCGAGGCCGAATGCATCGGCTGCACCAAGTGCATC 
CAGGCCTGCCCGGTGGACGCCATCGTCGGCGCCGCACGGCTGATGCACACGGTGATCGCCGACGAATGCACC 
GGTTGCGACCTGTGCCTGGAGCCCTGTCCGGTGGACTGCATCGAGATGCGCGAAACCCCAGACGACGTGCGC 
CACTGGAAATGGCCGCAGCCGTCGCCGCGACTGATCGCCAGCGACCGGGAGCGAGCGGCATGA