ViewGene
Locus Name:
GeneID:
Location:

GeneID:3876
TrivialName: PA14_26070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26070
PAO1 Ortholog Locus:PA2936
Sequence Length:582
Protein Length:193
Start: 2278077
Stop: 2277496
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06324.1|AE004719_10 (AE004719) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 191/193 (98%), Positives = 192/193 (99%)
Sequence:
GTGACGCATCCAGCGACCGTCTACAGCCTGTCCACCCGCCTGCTGCACTGGAGCATGGCGTTCTGTTTCATC
GGCGCGATCGTGCTGGCCTATTTCGTCATCTGGGTGCTCGGCCACGACCACCCGCAGCGCCTGCCGGTACTC
AACCTGCACTGGGTGCTGGGCCTGCTGGTCGGCCTGCTGCTGATCCCTCGGATCGTCTCACGGCTGCGCGGG
CCGCGCCTGCCAGCGGTCCCCGGCACGCCGCTGGAGCACCGCCTGGCGCACTACGCGCACCTGTCGCTGTAT
GCCTTGATGCTGGTGATGCCGCTCACCGGCTACGTCGGCACCCGCCTGCCCACCGACTTCGGCCTGTTCGTG
GTACCCAGCTTCAAGGACACCGCGCTGTTCGCCTGGATTTCGCAAACCTGGAACCTGAGCTGGGAGGCATTC
GAGAAGCCCTTCGACGCCGTTCACCGCGTGGTCGGCCTGTGGCTGAGCACCTCGGTGGTGCTGCTCCATGCG
CTCGCCGCCGGCTATCACCAGTGGGTCCGCCGCGACGGCACCCTGGAGCGCATGCTCGGCCGTCGCCAGCGC
CGCTGA
Translation:
MTHPATVYSLSTRLLHWSMAFCFIGAIVLAYFVIWVLGHDHPQRLPVLNLHWVLGLLVGLLLIPRIVSRLRG
PRLPAVPGTPLEHRLAHYAHLSLYALMLVMPLTGYVGTRLPTDFGLFVVPSFKDTALFAWISQTWNLSWEAF
EKPFDAVHRVVGLWLSTSVVLLHALAAGYHQWVRRDGTLERMLGRRQRR*
AnnotationID:3883GeneID:3876
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 12:12:42
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome b561
Cell Localization:()
Synonyms:PA2936
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3038,pfam01292
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3038, CybB, Cytochrome B561 [Energy production and conversion]
CD-Length = 181 residues,  99.4% aligned
Score =  119 bits (299), Expect = 3e-28
Identities = 59/192 (30%), Positives = 85/192 (44%), Gaps = 12/192 (6%)

pfam01292, Ni_hydr_CYTB, Cytochrome b561 family.
CD-Length = 174 residues, 100.0% aligned
Score =  115 bits (289), Expect = 4e-27
Identities = 61/186 (32%), Positives = 78/186 (41%), Gaps = 13/186 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14949




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24897




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36114




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3876_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3876
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6111
                           PA2936_tr
                           translation of PA2936
                           193
                           98.96
                           99.48
                           0
                           1016.0
     

     
     
170137
                           gb|AAG06324.1|AE004719_10
                           (AE004719) hypothetical protein PA2936 [Pseudomonas aeruginosa PAO1]
                           193
                           98.44
                           99.48
                           0
                           1013.0
     

     






      

          
GC ORFID: 46878How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2936Glimmer Score: 

          
Start: 2675848Stop: 2676429

          
Length: 582


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2936 translation of PA2936Homolog Bit Score 395.0

          
Other Homologs:  t_PA2936 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACGCATCCAGCGACCGTCTACAGCCTGTCCACCCGCCTGCTGCACTGGAGCATGGCGTTCTGTTTCATC 
GGCGCGATCGTGCTGGCCTATTTCGTCATCTGGGTGCTCGGCCACGACCACCCGCAGCGCCTGCCGGTACTC 
AACCTGCACTGGGTGCTGGGCCTGCTGGTCGGCCTGCTGCTGATCCCTCGGATCGTCTCACGGCTGCGCGGG 
CCGCGCCTGCCAGCGGTCCCCGGCACGCCGCTGGAGCACCGCCTGGCGCACTACGCGCACCTGTCGCTGTAT 
GCCTTGATGCTGGTGATGCCGCTCACCGGCTACGTCGGCACCCGCCTGCCCACCGACTTCGGCCTGTTCGTG 
GTACCCAGCTTCAAGGACACCGCGCTGTTCGCCTGGATTTCGCAAACCTGGAACCTGAGCTGGGAGGCATTC 
GAGAAGCCCTTCGACGCCGTTCACCGCGTGGTCGGCCTGTGGCTGAGCACCTCGGTGGTGCTGCTCCATGCG 
CTCGCCGCCGGCTATCACCAGTGGGTCCGCCGCGACGGCACCCTGGAGCGCATGCTCGGCCGTCGCCAGCGC 
CGCTGA