ViewGene

Locus Name:
GeneID:
Location:

GeneID:3875
TrivialName: PA14_29100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29100
PAO1 Ortholog Locus:PA2710
Sequence Length:615
Protein Length:204
Start: 2517997
Stop: 2517383
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06098.1|AE004699_3 (AE004699) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 202/204 (99%), Positives = 202/204 (99%)
Sequence:
ATGCTGGAAACCTCGCTCTTCGTAGCCACCCTCGCCACCCTGGGCATGCTCTCGCCCGGCCCGGACTTCTTC
CTGATCATCCGCAACGCGGCGCGCTACCAGCGCTCGGCGGCGATGATGACCTCGCTGGGGGTGATCCTCGGC
GTGGCCACCCACATGGCCTACTGCGTCGCCGGCCTGGCGGTGCTGATCACCACCACGCCGTGGCTGTTCAAC
GCGCTGAAGTACACCGGCGCGGTCTACCTGATCTGGATCGGCATCCAGGCCCTGCGCTCGCGCGGCGGCGGC
ACGCTCGACTTGGCGGTCGGCGGCGTGCAGCGCGTCGGCCACTGGAGCGCGTTCCTCCAGGGCTACCTGTGC
AACCTGCTCAACCCCAAGGCCACGCTGTTCTTCCTCGCCGTGTTCACCCAGGTGCTGAGCCTGGACTCCAGC
TTCGCCGAGAAGCTCTGGTACGCCGGCATCATCGTCGGCCTCGCCGCACTCTGGTGGCCGCTGCTGGTGGTG
CTGATCCAGAGCGCGGTGGTGCGCCGTGGCCTGGCCAGGGCCCAGGGGGTGGTGGACAAGCTGCTCGGCGGC
CTGCTGATCGCCCTCGGGGTCAAGGTCGCCCTGAGTTGA
Translation:
MLETSLFVATLATLGMLSPGPDFFLIIRNAARYQRSAAMMTSLGVILGVATHMAYCVAGLAVLITTTPWLFN
ALKYTGAVYLIWIGIQALRSRGGGTLDLAVGGVQRVGHWSAFLQGYLCNLLNPKATLFFLAVFTQVLSLDSS
FAEKLWYAGIIVGLAALWWPLLVVLIQSAVVRRGLARAQGVVDKLLGGLLIALGVKVALS*
AnnotationID:3882GeneID:3875
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 06:06:13
Gene Name:
Confidence Code:3
GeneProduct:putative threonine efflux protein
Cell Localization:()
Synonyms:PA2710
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative LysE type translocator
Functional Category Confidence Code:5
COGs:COG1280,pfam01810
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC89340.1| (AJ414143) putative LysE type translocator [Yersinia pestis CO92]
          Length = 204

 Score =  304 bits (779), Expect = 2e-82
 Identities = 153/203 (75%), Positives = 172/203 (84%)

>gb|AAO54676.1| (AE016859) transporter, LysE family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 210

 Score =  134 bits (337), Expect = 3e-31
 Identities = 75/203 (36%), Positives = 119/203 (58%), Gaps = 6/203 (2%)

Structural Features:
COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]
CD-Length = 208 residues,  98.6% aligned
Score =  108 bits (270), Expect = 6e-25
Identities = 75/207 (36%), Positives = 104/207 (50%), Gaps = 5/207 (2%)

pfam01810, LysE, LysE type translocator.
CD-Length = 191 residues,  98.4% aligned
Score = 86.4 bits (214), Expect = 2e-18
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 2/190 (1%)
Genomic Context:
Comment:
ReferenceID:7753
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24895
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36325
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3875_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3875

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6110 PA2710_tr translation of PA2710 204 99.01 99.01 0 1015.0
170133 gb|AAG06098.1|AE004699_3 (AE004699) hypothetical protein PA2710 [Pseudomonas aeruginosa PAO1] 204 99.01 99.01 0 1015.0
170135 emb|CAC89340.1| (AJ414143) putative LysE type translocator [Yersinia pestis CO92] 204 75.00 84.31 0 779.0
170134 gb|AAM87239.1|AE013972_6 (AE013972) hypothetical [Yersinia pestis KIM] 225 68.00 76.44 21 779.0
170136 emb|CAE12900.1| (BX571860) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 204 66.17 80.88 0 702.0
GC ORFID: 46877How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2710Glimmer Score:
Start: 2435929Stop: 2436543
Length: 615
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2710 translation of PA2710Homolog Bit Score 395.0
Other Homologs: t_PA2710 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGGAAACCTCGCTCTTCGTAGCCACCCTCGCCACCCTGGGCATGCTCTCGCCCGGCCCGGACTTCTTC
CTGATCATCCGCAACGCGGCGCGCTACCAGCGCTCGGCGGCGATGATGACCTCGCTGGGGGTGATCCTCGGC
GTGGCCACCCACATGGCCTACTGCGTCGCCGGCCTGGCGGTGCTGATCACCACCACGCCGTGGCTGTTCAAC
GCGCTGAAGTACACCGGCGCGGTCTACCTGATCTGGATCGGCATCCAGGCCCTGCGCTCGCGCGGCGGCGGC
ACGCTCGACTTGGCGGTCGGCGGCGTGCAGCGCGTCGGCCACTGGAGCGCGTTCCTCCAGGGCTACCTGTGC
AACCTGCTCAACCCCAAGGCCACGCTGTTCTTCCTCGCCGTGTTCACCCAGGTGCTGAGCCTGGACTCCAGC
TTCGCCGAGAAGCTCTGGTACGCCGGCATCATCGTCGGCCTCGCCGCACTCTGGTGGCCGCTGCTGGTGGTG
CTGATCCAGAGCGCGGTGGTGCGCCGTGGCCTGGCCAGGGCCCAGGGGGTGGTGGACAAGCTGCTCGGCGGC
CTGCTGATCGCCCTCGGGGTCAAGGTCGCCCTGAGTTGA