ViewGene
Locus Name:
GeneID:
Location:

GeneID:3874
TrivialName: PA14_01780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01780
PAO1 Ortholog Locus:PA0144
Sequence Length:627
Protein Length:208
Start: 163922
Stop: 163296
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03534.1|AE004452_6 (AE004452) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 199/208 (95%), Positives = 202/208 (97%)
Sequence:
ATGAGCCGATCCAACGGTTCCAGCAGCCGTCGTACCTTCTTGCGCCTGGCGGCCCTGCTGCTGCCCGCCGGC
GCCCTGCTCGGCAGCCTGCCGGGCGTACGCGCCGCGGCCAGACCGCGGAAACTCTATCTGGCCGGTCCCGAC
GTGTTCCGCGCCGACGCCGTCGCCCACGGCGAAGCGCTCAAGGCACTGTGCGCACGCTACGGCTTCGAAGGC
CTCTACCCGCTGGACAACGCGCTGCCGAAACAGCTCGCCGAGCCGCGCGAACAGGCGGCCTGGATCTACCGC
GCCAACATCGGCCTGATCGAACGCGCCGACGCGGTGCTGGCCAACCTGAACTTCTTCCGCGGCGCCGAGCCG
GACAGCGGCACCGCCTTCGAGGTCGGCTACGCCACCGCTCTCGGCAAGCCGGTCTATGGCTACGTCGACGAC
GCCGGCAGCTACGCCGAGCGGATCCGCCGGCACGCCCCGGAGCTGGTCGGCGAGGATCCGACCCGCGACCGC
GACGGCATGGCCCTGGAAGAGTTCGGCCTGCCGCTCAACCTGATGCTGGCGGTGCCCGGCAGGATCGTCGTC
GGCGACGCCGAGCAGGCTCTCCGGCAACTCGCCGGGCAATCCCGCGGCTGA
Translation:
MSRSNGSSSRRTFLRLAALLLPAGALLGSLPGVRAAARPRKLYLAGPDVFRADAVAHGEALKALCARYGFEG
LYPLDNALPKQLAEPREQAAWIYRANIGLIERADAVLANLNFFRGAEPDSGTAFEVGYATALGKPVYGYVDD
AGSYAERIRRHAPELVGEDPTRDRDGMALEEFGLPLNLMLAVPGRIVVGDAEQALRQLAGQSRG*
AnnotationID:3881GeneID:3874
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:36
Gene Name:
Confidence Code:3
GeneProduct:putative nucleoside 2-deoxyribosyltransferase
Cell Localization:()
Synonyms:PA0144
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3613,pfam05014
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3613, COG3613, Nucleoside 2-deoxyribosyltransferase 
[Nucleotide transport and metabolism]
CD-Length = 172 residues,  97.1% aligned
Score =  191 bits (487), Expect = 4e-50
Identities = 94/169 (55%), Positives = 114/169 (67%), Gaps = 3/169 (1%)

pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase.
CD-Length = 134 residues,  97.8% aligned
Score =  138 bits (350), Expect = 3e-34
Identities = 68/149 (45%), Positives = 80/149 (53%), Gaps = 19/149 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7751




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24893




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33508




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3874_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3874
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6108
                           PA0144_tr
                           translation of PA0144
                           208
                           95.67
                           97.11
                           0
                           1018.0
     

     
     
170125
                           gb|AAG03534.1|AE004452_6
                           (AE004452) hypothetical protein PA0144 [Pseudomonas aeruginosa PAO1]
                           208
                           95.67
                           97.11
                           0
                           1018.0
     

     
     
6109
                           PA0145_tr
                           translation of PA0145
                           210
                           57.14
                           63.80
                           40
                           617.0
     

     
     
170126
                           gb|AAG03535.1|AE004452_7
                           (AE004452) hypothetical protein PA0145 [Pseudomonas aeruginosa PAO1]
                           210
                           57.14
                           63.80
                           40
                           617.0
     

     
     
170128
                           emb|CAE35336.1|
                           (BX640452) conserved hypothetical [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           214
                           48.59
                           55.60
                           49
                           486.0
     

     






      

          
GC ORFID: 46876How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0144Glimmer Score: 

          
Start: 5965261Stop: 5964635

          
Length: 627


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0144 translation of PA0144Homolog Bit Score 396.0

          
Other Homologs:  t_PA0145 (ORF: BLASTX 243.0), psyr_15may02_Scaffold8_revised_gene7711 (ORF: BLASTX 135.0), t_PA0144 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGATCCAACGGTTCCAGCAGCCGTCGTACCTTCTTGCGCCTGGCGGCCCTGCTGCTGCCCGCCGGC 
GCCCTGCTCGGCAGCCTGCCGGGCGTACGCGCCGCGGCCAGACCGCGGAAACTCTATCTGGCCGGTCCCGAC 
GTGTTCCGCGCCGACGCCGTCGCCCACGGCGAAGCGCTCAAGGCACTGTGCGCACGCTACGGCTTCGAAGGC 
CTCTACCCGCTGGACAACGCGCTGCCGAAACAGCTCGCCGAGCCGCGCGAACAGGCGGCCTGGATCTACCGC 
GCCAACATCGGCCTGATCGAACGCGCCGACGCGGTGCTGGCCAACCTGAACTTCTTCCGCGGCGCCGAGCCG 
GACAGCGGCACCGCCTTCGAGGTCGGCTACGCCACCGCTCTCGGCAAGCCGGTCTATGGCTACGTCGACGAC 
GCCGGCAGCTACGCCGAGCGGATCCGCCGGCACGCCCCGGAGCTGGTCGGCGAGGATCCGACCCGCGACCGC 
GACGGCATGGCCCTGGAAGAGTTCGGCCTGCCGCTCAACCTGATGCTGGCGGTGCCCGGCAGGATCGTCGTC 
GGCGACGCCGAGCAGGCTCTCCGGCAACTCGCCGGGCAATCCCGCGGCTGA