ViewGene

Locus Name:
GeneID:
Location:

GeneID:3873
TrivialName: PA14_19170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19170
PAO1 Ortholog Locus:PA3472
Sequence Length:597
Protein Length:198
Start: 1655929
Stop: 1655333
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06860.1|AE004768_5 (AE004768) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 198/198 (100%), Positives = 198/198 (100%)
Sequence:
ATGCGTTCACCCTTTTTGACATGCCTGTCTGTAGGCTTCGCGGCCCTTCTGGCCGCCCTCTCGACGCCCAGC
CTGGCTTCCAACCAGGTCACCCACACCTTCAAGCCGTCGAAGAATTCCACCCTGTCGCCCAGCCGGGTCGTC
AGCACCCGCCAGTCCGCCAACCGCTCGGTGGTCGCGGCCGCCGCTTCCGAAGTCACCGACCGCGCCTTCAGC
ATGATCGGCACCCCCTACCGCTGGGGCGGCACCACGCCGAAGAAAGGCTTCGATTGCAGCGGCCTGGTCAAC
TATGTGTTCCAGGACGTCGATGACGTCGACCTGCCGCGGACCGCCCGCGCCATCTACAACATGGACAACAAC
AAGGTCTCCCGCGGCAAGCTGCAACCGGGCGACCTGGTGTTCTTCCGGATCCGCAGCCGCAGCGTCGACCAC
GTCGGCATCTACGTCGGCAACGACCGCTTCGTGCACGCGCCGCGGCGCGGCAAGAAGGTCCGCGTCTCCGAC
CTCAACAGCAGCTACTGGAAACGCCACTACCTGGCCGGCAAGCGCATCCTGCCGACCACCCTCGCCCAGGTC
GAAAGCACCCGCAAGCGCTGA
Translation:
MRSPFLTCLSVGFAALLAALSTPSLASNQVTHTFKPSKNSTLSPSRVVSTRQSANRSVVAAAASEVTDRAFS
MIGTPYRWGGTTPKKGFDCSGLVNYVFQDVDDVDLPRTARAIYNMDNNKVSRGKLQPGDLVFFRIRSRSVDH
VGIYVGNDRFVHAPRRGKKVRVSDLNSSYWKRHYLAGKRILPTTLAQVESTRKR*
AnnotationID:3880GeneID:3873
AnnotatorUID: diggins
Modification Date/Time: 2005-08-14 09:09:44
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:yafL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:NLP/P60 family protein
Functional Category Confidence Code:5
COGs:pfam00877,COG0791
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70657.1|AE016710_2 (AE016793) NLP/P60 family protein [Pseudomonas putida KT2440]
          Length = 207

 Score =  174 bits (441), Expect = 3e-43
 Identities = 80/153 (52%), Positives = 109/153 (71%), Gaps = 2/153 (1%)

>gb|AAP17151.1| (AE016984) putative lipoprotein [Shigella flexneri 2a str. 2457T]
          Length = 275

 Score =  138 bits (347), Expect = 2e-32
 Identities = 61/143 (42%), Positives = 98/143 (68%), Gaps = 3/143 (2%)

>gb|AAO68950.1| (AE016838) putative secreted protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 284

 Score =  137 bits (345), Expect = 4e-32
 Identities = 60/139 (43%), Positives = 95/139 (68%), Gaps = 3/139 (2%)
Structural Features:
pfam00877, NLPC_P60, NlpC/P60 family.
CD-Length = 106 residues, 100.0% aligned
Score =  121 bits (306), Expect = 4e-29
Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 5/110 (4%)

COG0791, Spr, Cell wall-associated hydrolases 
(invasion-associated proteins) 
[Cell envelope biogenesis, outer membrane]
CD-Length = 197 residues,  97.0% aligned
Score =  137 bits (345), Expect = 9e-34
Identities = 71/191 (37%), Positives = 91/191 (47%), Gaps = 9/191 (4%)
Genomic Context:
Comment:
ReferenceID:7749
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24891
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32087
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3873_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3873

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6105 PA3472_tr translation of PA3472 198 99.99 99.99 0 1017.0
170042 gb|AAG06860.1|AE004768_5 (AE004768) hypothetical protein PA3472 [Pseudomonas aeruginosa PAO1] 198 99.99 99.99 0 1017.0
170043 gb|AAC08599.1| (AF054868) hypothetical protein [Pseudomonas aeruginosa] 214 71.02 71.96 34 702.0
170044 gb|AAN70657.1|AE016710_2 (AE016793) NLP/P60 family protein [Pseudomonas putida KT2440] 209 44.49 61.24 13 437.0
6106 PA1199_tr translation of PA1199 208 41.34 54.32 41 379.0
GC ORFID: 46875How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3472Glimmer Score:
Start: 3298004Stop: 3298600
Length: 597
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3472 translation of PA3472Homolog Bit Score 396.0
Other Homologs: t_PA1199 (ORF: BLASTX 145.0), psyr_15may02_Scaffold5_revised_gene6466 (ORF: BLASTX 139.0), t_PA1198 (ORF: BLASTX 134.0), t_PA3472 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTTCACCCTTTTTGACATGCCTGTCTGTAGGCTTCGCGGCCCTTCTGGCCGCCCTCTCGACGCCCAGC
CTGGCTTCCAACCAGGTCACCCACACCTTCAAGCCGTCGAAGAATTCCACCCTGTCGCCCAGCCGGGTCGTC
AGCACCCGCCAGTCCGCCAACCGCTCGGTGGTCGCGGCCGCCGCTTCCGAAGTCACCGACCGCGCCTTCAGC
ATGATCGGCACCCCCTACCGCTGGGGCGGCACCACGCCGAAGAAAGGCTTCGATTGCAGCGGCCTGGTCAAC
TATGTGTTCCAGGACGTCGATGACGTCGACCTGCCGCGGACCGCCCGCGCCATCTACAACATGGACAACAAC
AAGGTCTCCCGCGGCAAGCTGCAACCGGGCGACCTGGTGTTCTTCCGGATCCGCAGCCGCAGCGTCGACCAC
GTCGGCATCTACGTCGGCAACGACCGCTTCGTGCACGCGCCGCGGCGCGGCAAGAAGGTCCGCGTCTCCGAC
CTCAACAGCAGCTACTGGAAACGCCACTACCTGGCCGGCAAGCGCATCCTGCCGACCACCCTCGCCCAGGTC
GAAAGCACCCGCAAGCGCTGA