ViewGene

Locus Name:
GeneID:
Location:

GeneID:3872
TrivialName: PA14_21600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21600
PAO1 Ortholog Locus:PA3281
Sequence Length:591
Protein Length:196
Start: 1872063
Stop: 1872653
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06669.1|AE004750_7 (AE004750) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 193/196 (98%), Positives = 195/196 (99%)
Sequence:
ATGAAGACTGTCTTCTTGCGTTTACAGCATGCCCTCGACGTCACCCGTCGAGCGGATTTCCTCGCCCCGCTG
GCGCTGCGCCTGTACCTGGCGCCGGTGTTCTGGATGGCCGGCAGCCAGAAGCTGGCGGACATGCCGGCCACC
ATCGAGTGGTTCGGCAATCCCGACTGGGGACTCGGTCTGCCGTTTCCCGAACTGCTGGCCTGGCTCGCCGCG
CTGAGCGAGGCCGGTGGCGCCGTGCTGCTGTTGTGCGGCCTGGCCGTGCGCTGGATCAGCCTGCCGCTGATG
GTGACCATGCTGGTAGCGATCTTCGCCGTGCACTGGCCGAACGGCTGGCAGGCGATCGCCGATCCGTCCGCG
CCGTTCGCCAACACCCAGGTGCTGGAGGCCGGCGAGAAGCTGGCGCGGGCCCGGGAAATCCTGCGCGAATAC
GGCAACTACGACTGGCTGACGTCGAGTGGAAGCTTCGCCATCCTCAACAACGGCATCGAGTTCGCCGCGACC
TACCTGGTGATGTTGCTCGCGCTGTTCTTCGGCGGCGCCGGCAAGTGGCTTTCTGCTGACTTCTGGATTGCG
CGAAAATTGCGCTGA
Translation:
MKTVFLRLQHALDVTRRADFLAPLALRLYLAPVFWMAGSQKLADMPATIEWFGNPDWGLGLPFPELLAWLAA
LSEAGGAVLLLCGLAVRWISLPLMVTMLVAIFAVHWPNGWQAIADPSAPFANTQVLEAGEKLARAREILREY
GNYDWLTSSGSFAILNNGIEFAATYLVMLLALFFGGAGKWLSADFWIARKLR*
AnnotationID:3879GeneID:3872
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 06:06:44
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3281
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7747
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24889
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32267
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3872_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3872

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6104 PA3281_tr translation of PA3281 196 98.46 99.48 0 1017.0
170040 gb|AAG06669.1|AE004750_7 (AE004750) hypothetical protein PA3281 [Pseudomonas aeruginosa PAO1] 196 98.46 99.48 0 1017.0
170041 gb|AAN55738.1|AE015710_6 (AE015710) conserved hypothetical protein [Shewanella oneidensis MR-1] 198 60.10 71.21 3 587.0
GC ORFID: 46874How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3281Glimmer Score:
Start: 3081868Stop: 3081278
Length: 591
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3281 translation of PA3281Homolog Bit Score 396.0
Other Homologs: t_PA3281 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGACTGTCTTCTTGCGTTTACAGCATGCCCTCGACGTCACCCGTCGAGCGGATTTCCTCGCCCCGCTG
GCGCTGCGCCTGTACCTGGCGCCGGTGTTCTGGATGGCCGGCAGCCAGAAGCTGGCGGACATGCCGGCCACC
ATCGAGTGGTTCGGCAATCCCGACTGGGGACTCGGTCTGCCGTTTCCCGAACTGCTGGCCTGGCTCGCCGCG
CTGAGCGAGGCCGGTGGCGCCGTGCTGCTGTTGTGCGGCCTGGCCGTGCGCTGGATCAGCCTGCCGCTGATG
GTGACCATGCTGGTAGCGATCTTCGCCGTGCACTGGCCGAACGGCTGGCAGGCGATCGCCGATCCGTCCGCG
CCGTTCGCCAACACCCAGGTGCTGGAGGCCGGCGAGAAGCTGGCGCGGGCCCGGGAAATCCTGCGCGAATAC
GGCAACTACGACTGGCTGACGTCGAGTGGAAGCTTCGCCATCCTCAACAACGGCATCGAGTTCGCCGCGACC
TACCTGGTGATGTTGCTCGCGCTGTTCTTCGGCGGCGCCGGCAAGTGGCTTTCTGCTGACTTCTGGATTGCG
CGAAAATTGCGCTGA