ViewGene
Locus Name:
GeneID:
Location:

GeneID:3871
TrivialName: PA14_67410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67410
PAO1 Ortholog Locus:PA5104
Sequence Length:591
Protein Length:196
Start: 6020860
Stop: 6020270
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08489.1|AE004923_5 (AE004923) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 193/196 (98%), Positives = 193/196 (98%)
Sequence:
ATGAGCGAATTCCGCATCCTGCGCGCCGTCGACTACCCGAGAATGCCGTGGAAGAACGGCGCCGGCTCCACC
GAGGAGATCGCCCGCGACGGCGGCGACGGCCTGGACGGCTTCGGCTGGCGCCTGTCGATCGCCGATGTCGGC
GAGTCCGGCGGCTTCTCCCGCTTCGCCGGTTACCAGCGGATCATCAGCGTGCTGGAGGGCGGCGGCATGCGC
CTGCGGGTGGATGGCGCGGAATCCGCGCCGCTACGCGCGCGGCAGGCCTTCGCCTTTTCCGGCGACAGCGAG
GTGCACTGCACCCTGCTCGATGGAGCTATCCGCGACTTCAACCTGATCTATGCGCCCCGGCGCCATCGCGCG
CGCCTGCAATGGCTGCGGGTCGAGGGCGAGCTGGACTGGCACGGCACGGCGAGCACGCTGCTGCTGTTCGCC
CAGCAGGGCGGGGTAGCGATTTCCTTGCAAGGGCAACCTCGCGGGCAACTGGCTGCCCACGACTGCCTGTGC
GCCGAGGGACTGCAGGGCTTGCAGCATTGGCGCCTGACGGCACACGAGCCGGCGTGGGTCTGTGCGGTGGAA
CTCGATTCGCTGTGA
Translation:
MSEFRILRAVDYPRMPWKNGAGSTEEIARDGGDGLDGFGWRLSIADVGESGGFSRFAGYQRIISVLEGGGMR
LRVDGAESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFA
QQGGVAISLQGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVELDSL*
AnnotationID:3878GeneID:3871
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 07:07:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5104
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7745




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24887




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34961




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3871_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3871
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6103
                           PA5104_tr
                           translation of PA5104
                           196
                           98.46
                           98.46
                           0
                           1021.0
     

     
     
170032
                           gb|AAG08489.1|AE004923_5
                           (AE004923) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           196
                           98.46
                           98.46
                           0
                           1021.0
     

     
     
170035
                           gb|AAA25842.1|
                           (M33922) protein of unknown function [Pseudomonas putida]
                           199
                           58.79
                           69.84
                           12
                           561.0
     

     
     
170033
                           gb|AAN70599.1|AE016702_8
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           204
                           57.35
                           68.13
                           22
                           565.0
     

     
     
170036
                           gb|AAK15635.1|
                           (AF326719) unknown [Pseudomonas syringae]
                           196
                           55.61
                           66.32
                           4
                           538.0
     

     






      

          
GC ORFID: 46873How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5104Glimmer Score: 

          
Start: 5284545Stop: 5283955

          
Length: 591


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5104 translation of PA5104Homolog Bit Score 397.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3817 (ORF: BLASTX 223.0), t_PA5104 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAATTCCGCATCCTGCGCGCCGTCGACTACCCGAGAATGCCGTGGAAGAACGGCGCCGGCTCCACC 
GAGGAGATCGCCCGCGACGGCGGCGACGGCCTGGACGGCTTCGGCTGGCGCCTGTCGATCGCCGATGTCGGC 
GAGTCCGGCGGCTTCTCCCGCTTCGCCGGTTACCAGCGGATCATCAGCGTGCTGGAGGGCGGCGGCATGCGC 
CTGCGGGTGGATGGCGCGGAATCCGCGCCGCTACGCGCGCGGCAGGCCTTCGCCTTTTCCGGCGACAGCGAG 
GTGCACTGCACCCTGCTCGATGGAGCTATCCGCGACTTCAACCTGATCTATGCGCCCCGGCGCCATCGCGCG 
CGCCTGCAATGGCTGCGGGTCGAGGGCGAGCTGGACTGGCACGGCACGGCGAGCACGCTGCTGCTGTTCGCC 
CAGCAGGGCGGGGTAGCGATTTCCTTGCAAGGGCAACCTCGCGGGCAACTGGCTGCCCACGACTGCCTGTGC 
GCCGAGGGACTGCAGGGCTTGCAGCATTGGCGCCTGACGGCACACGAGCCGGCGTGGGTCTGTGCGGTGGAA 
CTCGATTCGCTGTGA