ViewGene
Locus Name:
GeneID:
Location:

GeneID:3870
TrivialName: PA14_12210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12210
PAO1 Ortholog Locus:PA3988
Sequence Length:624
Protein Length:207
Start: 1055343
Stop: 1054720
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07375.1|AE004816_11 (AE004816) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 207/207 (100%), Positives = 207/207 (100%)
Sequence:
ATGAAACGTATCCTGACCAGCGCCGCGCTGATCGGTATGACCACCCTGCTGGCCGCCTGCGGCTTCCAACTG
CGCGGCCTGGGCGATGCGCAATTCGCGCTCAAGGAAATCGACGTGTCCGCGCGCAACGCCTACGGCCCGACC
GTGCGCGAACTGAAGGAAACCCTGGAAAACAGCGGCGTGAAGGTCACCAGCAACGCGCCCTACCACCTGGTG
CTGGTCCGCGAGGACAACCAGCAGCGCACCGTCAGCTACACCGGTTCCGCGCGCGGCGCGGAGTTCGAGCTG
ACCAACACGATCAACTACGAGATCGTCGGCGCCAACGACCTGGTCCTGATGAGCAACCAGGTACAGGTGCAG
AAGGTCTACGTGCACGACGAAAACAACCTGATCGGTTCCGACCAGGAAGCCGCGCAGCTGCGCAGCGAGATG
CGGCGCGACCTGATCCAGCAGTTGTCCATGCGCCTCCAGGCGCTGACCCCGGCGCAACTCGACGAAGCCCAG
CGCCAGGCAGAAGCCAAGGCCAAGGCGGAAGCCGAAGCCCTGCGCGCCGCCGACGAGGCGGAGCGCCAGCGC
CGCGCCGCCGAGCCGCAGCAGTCGCCGATCGAGTTCCCCACCCCGTGA
Translation:
MKRILTSAALIGMTTLLAACGFQLRGLGDAQFALKEIDVSARNAYGPTVRELKETLENSGVKVTSNAPYHLV
LVREDNQQRTVSYTGSARGAEFELTNTINYEIVGANDLVLMSNQVQVQKVYVHDENNLIGSDQEAAQLRSEM
RRDLIQQLSMRLQALTPAQLDEAQRQAEAKAKAEAEALRAADEAERQRRAAEPQQSPIEFPTP*
AnnotationID:3877GeneID:3870
AnnotatorUID: urbach
Modification Date/Time: 2004-09-01 13:01:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2980,pfam04390
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAO58242.1| (AE016873) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
Length = 201
Score =  220 bits (561), Expect = 4e-57
Identities = 112/196 (57%), Positives = 145/196 (73%), Gaps = 4/196 (2%)

gb|AAN70364.1|AE016678_5 (AE016792) lipoprotein, putative [Pseudomonas putida KT2440]
Length = 201
Score =  211 bits (537), Expect = 2e-54
Identities = 105/196 (53%), Positives = 146/196 (74%), Gaps = 4/196 (2%)






 
Structural Features:
gnl|CDD|12324 COG2980, RlpB, Rare lipoprotein B [Cell envelope biogenesis, outer membrane]
Length = 178
Score =  171 bits (434), Expect = 1e-43
Identities = 64/181 (35%), Positives = 93/181 (51%), Gaps = 6/181 (3%)






   
Genomic Context:






   
Comment:
Possible lipoprotein


















    ReferenceID:7743




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24885




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3870
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6102
                           PA3988_tr
                           translation of PA3988
                           207
                           99.99
                           99.99
                           0
                           1020.0
     

     
     
170029
                           gb|AAG07375.1|AE004816_11
                           (AE004816) hypothetical protein PA3988 [Pseudomonas aeruginosa PAO1]
                           207
                           99.99
                           99.99
                           0
                           1020.0
     

     
     
170030
                           gb|AAO58242.1|
                           (AE016873) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           209
                           55.98
                           71.29
                           10
                           563.0
     

     
     
170031
                           gb|AAN70364.1|AE016678_5
                           (AE016792) lipoprotein, putative [Pseudomonas putida KT2440]
                           208
                           51.92
                           72.11
                           8
                           536.0
     

     






      

          
GC ORFID: 46872How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3988Glimmer Score: 

          
Start: 3898595Stop: 3899218

          
Length: 624


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3988 translation of PA3988Homolog Bit Score 397.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5733 (ORF: BLASTX 212.0), t_PA3988 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGTATCCTGACCAGCGCCGCGCTGATCGGTATGACCACCCTGCTGGCCGCCTGCGGCTTCCAACTG 
CGCGGCCTGGGCGATGCGCAATTCGCGCTCAAGGAAATCGACGTGTCCGCGCGCAACGCCTACGGCCCGACC 
GTGCGCGAACTGAAGGAAACCCTGGAAAACAGCGGCGTGAAGGTCACCAGCAACGCGCCCTACCACCTGGTG 
CTGGTCCGCGAGGACAACCAGCAGCGCACCGTCAGCTACACCGGTTCCGCGCGCGGCGCGGAGTTCGAGCTG 
ACCAACACGATCAACTACGAGATCGTCGGCGCCAACGACCTGGTCCTGATGAGCAACCAGGTACAGGTGCAG 
AAGGTCTACGTGCACGACGAAAACAACCTGATCGGTTCCGACCAGGAAGCCGCGCAGCTGCGCAGCGAGATG 
CGGCGCGACCTGATCCAGCAGTTGTCCATGCGCCTCCAGGCGCTGACCCCGGCGCAACTCGACGAAGCCCAG 
CGCCAGGCAGAAGCCAAGGCCAAGGCGGAAGCCGAAGCCCTGCGCGCCGCCGACGAGGCGGAGCGCCAGCGC 
CGCGCCGCCGAGCCGCAGCAGTCGCCGATCGAGTTCCCCACCCCGTGA