ViewGene
Locus Name:
GeneID:
Location:

GeneID:387
TrivialName: PA14_33070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33070
PAO1 Ortholog Locus:PA2439
Sequence Length:2001
Protein Length:666
Start: 2895611
Stop: 2897611
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05827.1|AE004671_3 (AE004671) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 658/666 (98%), Positives = 659/666 (98%)
Sequence:
ATGAGAGTCGACCTGGACGCCGAGGGCGTCGCCGCCGAATCGCTGCCGCGTTTCCAGCAGGCGCCCCGGCAG
TTGCGCCAGTTGTGGCGATGGGCAGCGGCCAGCGTCGCATTGGCCGCCGCCTGCGCTGTGCTGGGGTTCTTC
ATCGGCCTGTTCGCCGCCGACTCGCTCTGGCCGCCGCTGCTGTACAACCTCGGCGCGGCCTGGCTGGTTCTG
TTCGCCGGTCTGCACGCGGCCTACCGGGTCGCGGCCTGGCGTTGCGTGGTCCTCGGCGCGGAGGCCAGCGCG
CGGCCTGCCTGGCTGCGCTGGCAGCGGGGCGAACCCGACGCCGCTGCCGACAGCGCCTATGAACGGCTGCTG
GAGCGCCTGGGCCAGGCCATCGCCCACGGCCTGGCCCAGCTCGGGCACGCTGCGCTGTGGCTGGCGGCGAGC
GCGGCGCTGGCGTTGTGCCTGGTAGCCGCCGGCTGGCGTCTCGACCTGCCGCCGGCCAGTTCCGGGCAAGCG
GCCGACCTCGCCATCGGGATCTGCCTGCTGCTGGCCTTCGCGGTGCTGGTGCTGGAACGTCGCTTCGCCAGC
CAAGGGCCGGCGCAGTGGCCGGAAGCCCCGGCCCTCGGGCAACTGGCGCGGGCGCTGATCGGTACCCTGGTG
CTGGCCGCCCTCTGTCTGTTCCTGGCTCGCCAGGGACACCCCTGGGCCCCGCGCCTGGCGGTACTGCTCGGC
CTGTTGCCGGCGGCGCTGGCGCTGGAGTTGCTGGGCAGGGCGATCCTGGCGATGTTCGCGCCGCAGCGTGCC
GGCCTCGAACCGCGCCTGGTCGCCACCAGCCTGCTGGCCGACCTGTTGCGCTGGCCGCCGCGTCCCCTGCAG
CGTCTGCAGCATGAGTTGCACCAGCGCTTCGGCATCGACCTGCGCCAGGTCTGGGCCTTCGGTTTCATGCGG
CGGGCGTTCCTGCCGGTGCTGGCGGTGGTGTCGCTGAGCGGCTGGCTGCTCAGCGGCGTACGCGAGATCGGC
ATGGATGCACGGGGCGTCTACGAGCGCTTCGGCAAGCCGGTCGCGGTGCTCGGCCCCGGCCTGCACCTGGGG
CTGCCCTGGCCGCTGGGGCGGGTGTTGGCGGTGGAGAACGGGGTGGTCCACGAGTTGGCCACCAGCGTCGCC
GCCGGCGACGGCGGAGCCGAGCCGCTCGCGCCCGCCGAAGGTCCGGCCCCGGATAGCGCCAACCGCTTGTGG
GACGCCTCCCACGTCAGCGAGAAATCGCAGGTCATCGCCAGCCTGGCCGACCGCCGGCAGAGCTTCCAGATC
GTCAACATGGACGTGCGCATCGTCTACCGCATCGCTCTCGACGACGCGGCAGCGCTGGCGGCGACCTACCGC
AGCGCCGACGTGCCGACGCTGGTGCGCAGCACCGCCAGCCGCGTACTGGTGCATGCCTTCGCCTCGCGGACC
CTCGACGAGGTCCTCGGCGAGCAGCGCGCGGGCCTGGCCGAGCAGATCGGCCAGGCCGTGCAGGCCGATCTC
GACCGCCTCGGCAGCGGCGTCGAGGTACTGGGCGCGGCGGTCGAGGCGATCCATCCGCCGGCCGGTGCGGCG
AACGCCTACCACGCGGTGCAGGCCGCGCAGATCACCGCCCAGGCGCTGATCGCCCGCGAGCGCGGGCAGGCC
GCCGCGCAGCGCAACGAGGCGCAACTACAGGCCAGCGTGGCGCACGACCGGGCCAGCGCGCAGGCCCGCGAG
ACCCTGGCCGCCGCGCAGGCCGCCGACCGGCGCTTCGCCGCCGAGCGGGAAGGCTATGCCGACGCCAGCCAG
GCTTTCCTGCTGGAGGCCTACTACCGCCAGCTCGGGCTCGGCCTGGGCAAGGCCAACCTGCTGCTCATCGAC
CACCGCATCGCCGGCGCCGGCGCGCCGACCATCGACCTGCGCAGCTTCGGCCTCGGCCGCCTGGATTCCCCG
TCTTCGTCCCGTCCGTCCGCCGCTCCGGCGTCCGCGGCCGGGCAATCCGCACCATGA
Translation:
MRVDLDAEGVAAESLPRFQQAPRQLRQLWRWAAASVALAAACAVLGFFIGLFAADSLWPPLLYNLGAAWLVL
FAGLHAAYRVAAWRCVVLGAEASARPAWLRWQRGEPDAAADSAYERLLERLGQAIAHGLAQLGHAALWLAAS
AALALCLVAAGWRLDLPPASSGQAADLAIGICLLLAFAVLVLERRFASQGPAQWPEAPALGQLARALIGTLV
LAALCLFLARQGHPWAPRLAVLLGLLPAALALELLGRAILAMFAPQRAGLEPRLVATSLLADLLRWPPRPLQ
RLQHELHQRFGIDLRQVWAFGFMRRAFLPVLAVVSLSGWLLSGVREIGMDARGVYERFGKPVAVLGPGLHLG
LPWPLGRVLAVENGVVHELATSVAAGDGGAEPLAPAEGPAPDSANRLWDASHVSEKSQVIASLADRRQSFQI
VNMDVRIVYRIALDDAAALAATYRSADVPTLVRSTASRVLVHAFASRTLDEVLGEQRAGLAEQIGQAVQADL
DRLGSGVEVLGAAVEAIHPPAGAANAYHAVQAAQITAQALIARERGQAAAQRNEAQLQASVAHDRASAQARE
TLAAAQAADRRFAAEREGYADASQAFLLEAYYRQLGLGLGKANLLLIDHRIAGAGAPTIDLRSFGLGRLDSP
SSSRPSAAPASAAGQSAP*
AnnotationID:396GeneID:387
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2439
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:777




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17919




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:387
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
647
                           PA2439_tr
                           translation of PA2439
                           666
                           98.79
                           98.94
                           0
                           3307.0
     

     
     
29650
                           gb|AAG05827.1|AE004671_3
                           (AE004671) hypothetical protein PA2439 [Pseudomonas aeruginosa PAO1]
                           666
                           98.79
                           98.94
                           0
                           3307.0
     

     
     
29651
                           gb|AAO58954.1|
                           (AE016876) SPFH domain / Band 7 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           676
                           59.17
                           69.23
                           38
                           1863.0
     

     






      

          
GC ORFID: 43389How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2439Glimmer Score: 

          
Start: 2058305Stop: 2056305

          
Length: 2001


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2439 translation of PA2439Homolog Bit Score 1278.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4159 (ORF: BLASTX 712.0), t_PA2439 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGAGTCGACCTGGACGCCGAGGGCGTCGCCGCCGAATCGCTGCCGCGTTTCCAGCAGGCGCCCCGGCAG 
TTGCGCCAGTTGTGGCGATGGGCAGCGGCCAGCGTCGCATTGGCCGCCGCCTGCGCTGTGCTGGGGTTCTTC 
ATCGGCCTGTTCGCCGCCGACTCGCTCTGGCCGCCGCTGCTGTACAACCTCGGCGCGGCCTGGCTGGTTCTG 
TTCGCCGGTCTGCACGCGGCCTACCGGGTCGCGGCCTGGCGTTGCGTGGTCCTCGGCGCGGAGGCCAGCGCG 
CGGCCTGCCTGGCTGCGCTGGCAGCGGGGCGAACCCGACGCCGCTGCCGACAGCGCCTATGAACGGCTGCTG 
GAGCGCCTGGGCCAGGCCATCGCCCACGGCCTGGCCCAGCTCGGGCACGCTGCGCTGTGGCTGGCGGCGAGC 
GCGGCGCTGGCGTTGTGCCTGGTAGCCGCCGGCTGGCGTCTCGACCTGCCGCCGGCCAGTTCCGGGCAAGCG 
GCCGACCTCGCCATCGGGATCTGCCTGCTGCTGGCCTTCGCGGTGCTGGTGCTGGAACGTCGCTTCGCCAGC 
CAAGGGCCGGCGCAGTGGCCGGAAGCCCCGGCCCTCGGGCAACTGGCGCGGGCGCTGATCGGTACCCTGGTG 
CTGGCCGCCCTCTGTCTGTTCCTGGCTCGCCAGGGACACCCCTGGGCCCCGCGCCTGGCGGTACTGCTCGGC 
CTGTTGCCGGCGGCGCTGGCGCTGGAGTTGCTGGGCAGGGCGATCCTGGCGATGTTCGCGCCGCAGCGTGCC 
GGCCTCGAACCGCGCCTGGTCGCCACCAGCCTGCTGGCCGACCTGTTGCGCTGGCCGCCGCGTCCCCTGCAG 
CGTCTGCAGCATGAGTTGCACCAGCGCTTCGGCATCGACCTGCGCCAGGTCTGGGCCTTCGGTTTCATGCGG 
CGGGCGTTCCTGCCGGTGCTGGCGGTGGTGTCGCTGAGCGGCTGGCTGCTCAGCGGCGTACGCGAGATCGGC 
ATGGATGCACGGGGCGTCTACGAGCGCTTCGGCAAGCCGGTCGCGGTGCTCGGCCCCGGCCTGCACCTGGGG 
CTGCCCTGGCCGCTGGGGCGGGTGTTGGCGGTGGAGAACGGGGTGGTCCACGAGTTGGCCACCAGCGTCGCC 
GCCGGCGACGGCGGAGCCGAGCCGCTCGCGCCCGCCGAAGGTCCGGCCCCGGATAGCGCCAACCGCTTGTGG 
GACGCCTCCCACGTCAGCGAGAAATCGCAGGTCATCGCCAGCCTGGCCGACCGCCGGCAGAGCTTCCAGATC 
GTCAACATGGACGTGCGCATCGTCTACCGCATCGCTCTCGACGACGCGGCAGCGCTGGCGGCGACCTACCGC 
AGCGCCGACGTGCCGACGCTGGTGCGCAGCACCGCCAGCCGCGTACTGGTGCATGCCTTCGCCTCGCGGACC 
CTCGACGAGGTCCTCGGCGAGCAGCGCGCGGGCCTGGCCGAGCAGATCGGCCAGGCCGTGCAGGCCGATCTC 
GACCGCCTCGGCAGCGGCGTCGAGGTACTGGGCGCGGCGGTCGAGGCGATCCATCCGCCGGCCGGTGCGGCG 
AACGCCTACCACGCGGTGCAGGCCGCGCAGATCACCGCCCAGGCGCTGATCGCCCGCGAGCGCGGGCAGGCC 
GCCGCGCAGCGCAACGAGGCGCAACTACAGGCCAGCGTGGCGCACGACCGGGCCAGCGCGCAGGCCCGCGAG 
ACCCTGGCCGCCGCGCAGGCCGCCGACCGGCGCTTCGCCGCCGAGCGGGAAGGCTATGCCGACGCCAGCCAG 
GCTTTCCTGCTGGAGGCCTACTACCGCCAGCTCGGGCTCGGCCTGGGCAAGGCCAACCTGCTGCTCATCGAC 
CACCGCATCGCCGGCGCCGGCGCGCCGACCATCGACCTGCGCAGCTTCGGCCTCGGCCGCCTGGATTCCCCG 
TCTTCGTCCCGTCCGTCCGCCGCTCCGGCGTCCGCGGCCGGGCAATCCGCACCATGA