ViewGene
Locus Name:
GeneID:
Location:

GeneID:3869
TrivialName: PA14_12780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12780
PAO1 Ortholog Locus:PA3948
Sequence Length:630
Protein Length:209
Start: 1096593
Stop: 1095964
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07335.1|AE004813_2 (AE004813) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 206/209 (98%), Positives = 207/209 (99%)
Sequence:
ATGCATACCGTCCTGATCGTCGACGACCACCCCGTCATCCGCCTCGCCGTGCGCGTCCTGCTGGAAAAGCAT
GGTTTGCAGGTGGTGGCCGAGACGGACAATGGCGTGGATGCCATCCAGTTGGTCCGGGAGCACGAACCGGAC
GTGGTGATTCTCGACATCGGCATTCCCAAGCTCGACGGCCTGACCGTGATCTCGCGGATCAAGTCGCTGGAA
CTGCGCACCCAGGTGCTGGTACTCACTTCACAATCCGCAGAGGCGTTCTGCAAGCGCTGTATCCAGGTCGGC
GCCCGTGGGTTCGTCAACAAGGAAGAAGACCTGAACAACCTGATCAACGCCCTGAACGCCGTGATCGCTGGC
TACACGTTCTTTCCTTCGCTCACGTTCGATACCCTCGGCACCCCGCCGGAGCGCATTTCCGAAAGCGAGCTT
ATCGGCCTGCTCTCCGACCGCGAGATGATCGTCCTCCAGCATCTCGCCATGGGCTATTCGAACAAGGCCATC
GGCGAGAAGCTGTTCCTCAGCAACAAGACCGTCAGCACCTACAAGACCCGCCTGCTGCAGAAGCTCGGCCTG
GGTTCGCTGGTCGACCTCGCAGAGTTCGCCAAGCGCAATTCGCTGATCCACTGA
Translation:
MHTVLIVDDHPVIRLAVRVLLEKHGLQVVAETDNGVDAIQLVREHEPDVVILDIGIPKLDGLTVISRIKSLE
LRTQVLVLTSQSAEAFCKRCIQVGARGFVNKEEDLNNLINALNAVIAGYTFFPSLTFDTLGTPPERISESEL
IGLLSDREMIVLQHLAMGYSNKAIGEKLFLSNKTVSTYKTRLLQKLGLGSLVDLAEFAKRNSLIH*
AnnotationID:3876GeneID:3869
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 13:01:31
Gene Name:
Confidence Code:3
GeneProduct:probable two-component response regulator
Cell Localization:()
Synonyms:PA3948
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2197, pfam00072, smart00448, cd00156
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAC73637.1| (AE000159) fimbrial Z protein; probable signal transducer [Escherichia coli K12]
Length: 212
PctIdentity: 41.03
Similarity: 65.56
Gaps: 5
BitScore: 414.0






 
Structural Features:
gnl|CDD|11904 COG2197, CitB, Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Length = 211
Score =  182 bits (463), Expect = 5e-47
Identities = 85/209 (40%), Posit






   
Genomic Context:






   
Comment:


















    ReferenceID:7741




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24883




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3869
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6099
                           PA3948_tr
                           translation of PA3948
                           209
                           98.56
                           99.04
                           0
                           1019.0
     

     
     
170004
                           gb|AAG07335.1|AE004813_2
                           (AE004813) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           209
                           98.56
                           99.04
                           0
                           1019.0
     

     
     
6100
                           PA3045_tr
                           translation of PA3045
                           212
                           59.43
                           74.05
                           8
                           593.0
     

     
     
170012
                           gb|AAG06433.1|AE004729_7
                           (AE004729) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           212
                           59.43
                           74.05
                           8
                           593.0
     

     
     
170005
                           gb|AAO57607.1|
                           (AE016870) DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000]
                           209
                           59.33
                           77.51
                           1
                           629.0
     

     






      

          
GC ORFID: 46871How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3948Glimmer Score: 

          
Start: 3857345Stop: 3857974

          
Length: 630


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3948 translation of PA3948Homolog Bit Score 397.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6269 (ORF: BLASTX 246.0), t_PA3045 (ORF: BLASTX 230.0), psyr_15may02_Scaffold1_revised_gene352 (ORF: BLASTX 224.0), t_PA0034 (ORF: BLASTX 218.0), t_PA3948 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATACCGTCCTGATCGTCGACGACCACCCCGTCATCCGCCTCGCCGTGCGCGTCCTGCTGGAAAAGCAT 
GGTTTGCAGGTGGTGGCCGAGACGGACAATGGCGTGGATGCCATCCAGTTGGTCCGGGAGCACGAACCGGAC 
GTGGTGATTCTCGACATCGGCATTCCCAAGCTCGACGGCCTGACCGTGATCTCGCGGATCAAGTCGCTGGAA 
CTGCGCACCCAGGTGCTGGTACTCACTTCACAATCCGCAGAGGCGTTCTGCAAGCGCTGTATCCAGGTCGGC 
GCCCGTGGGTTCGTCAACAAGGAAGAAGACCTGAACAACCTGATCAACGCCCTGAACGCCGTGATCGCTGGC 
TACACGTTCTTTCCTTCGCTCACGTTCGATACCCTCGGCACCCCGCCGGAGCGCATTTCCGAAAGCGAGCTT 
ATCGGCCTGCTCTCCGACCGCGAGATGATCGTCCTCCAGCATCTCGCCATGGGCTATTCGAACAAGGCCATC 
GGCGAGAAGCTGTTCCTCAGCAACAAGACCGTCAGCACCTACAAGACCCGCCTGCTGCAGAAGCTCGGCCTG 
GGTTCGCTGGTCGACCTCGCAGAGTTCGCCAAGCGCAATTCGCTGATCCACTGA