ViewGene
Locus Name:
GeneID:
Location:

GeneID:3868
TrivialName: PA14_21030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21030
PAO1 Ortholog Locus:PA3326
Sequence Length:606
Protein Length:201
Start: 1817157
Stop: 1817762
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06714.1|AE004755_1 (AE004755) probable Clp-family ATP-dependent protease [Pseudomonas aeruginosa PAO1]
Identities = 201/201 (100%), Positives = 201/201 (100%)
Sequence:
ATGAAAACCGATGACAAGGACCGCGAAGGCGGCGACTCCCACGGCGCCATCGGCGCCAAGCTGATGGAGTAC
GCGCTCAAGGTCAGGAAGGTGTTCGTCACCGGCGGGGTCGACGAGAAGATGGCCAAGGACGTCGTCCAGCAG
CTGCACATCCTCGCCTCGATCAGCGACGATCCGATCTACATGTTCGTCAATTCTCCGGGTGGCCACGTCGAG
TCCGGCGACATGATCTTCGACGCGATCCGCTTCATCACACCGAAGGTCATCATGATCGGTTCCGGCAGCGTA
GCCAGCGCCGGCGCGCTGATTTACGCCGCGGCGGACAAGGAAAACCGCTATTCGCTGCCCAATACCCGCTTC
CTTCTGCACCAGCCGTCGGGCGGCATCCAGGGGCCGGCGAGCAACATCGAGATCTACCGCCGCGAGATCGTG
CGGATGAAGGAACGCCTCGACCGGATCTTCGCCGAAGCCACCGGGCAGACGCCGGAGAAGATCAGCGCCGAC
ACCGAGCGCGATTTCTGGCTGAACGCGGAAGAAGCCGTGCAGTACGGCCTGGTCAACAAGATCATCGTTTCG
GAACGGGAGATCACGCTGCCTGGCCAGTGA
Translation:
MKTDDKDREGGDSHGAIGAKLMEYALKVRKVFVTGGVDEKMAKDVVQQLHILASISDDPIYMFVNSPGGHVE
SGDMIFDAIRFITPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIV
RMKERLDRIFAEATGQTPEKISADTERDFWLNAEEAVQYGLVNKIIVSEREITLPGQ*
AnnotationID:3875GeneID:3868
AnnotatorUID: danlee
Modification Date/Time: 2006-01-31 12:12:39
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-dependent Clp protease proteolytic subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00574,COG0740
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC46961.1| (AL591790) CLP PROTEASE PROTEOLYTIC SUBUNIT PROTEIN [Sinorhizobium
           meliloti]
          Length = 195

 Score =  214 bits (545), Expect = 2e-55
 Identities = 112/196 (57%), Positives = 142/196 (72%), Gaps = 1/196 (0%)

>gb|AAL43259.1| (AE009176) ATP-dependent Clp protease, proteolytic subunit
           [Agrobacterium tumefaciens str. C58 (U. Washington)]
          Length = 201

 Score =  208 bits (530), Expect = 1e-53
 Identities = 107/193 (55%), Positives = 140/193 (72%), Gaps = 5/193 (2%)

>gb|AAC26595.1| (AE001271) ATP-dependent Clp protease proteolytic component
           (clpP-2) [Treponema pallidum]
          Length = 237

 Score =  158 bits (400), Expect = 2e-38
 Identities = 76/175 (43%), Positives = 124/175 (70%), Gaps = 3/175 (1%)






 
Structural Features:
pfam00574, CLP_protease, Clp protease. 
CD-Length = 182 residues, 100.0% aligned
Score =  218 bits (557), Expect = 4e-58
Identities = 79/182 (43%), Positives = 118/182 (64%), Gaps = 1/182 (0%)

COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases 
[Posttranslational modification, protein turnover, chaperones / 
Intracellular trafficking and secretion]
CD-Length = 200 residues,  88.0% aligned
Score =  210 bits (536), Expect = 1e-55
Identities = 86/176 (48%), Positives = 121/176 (68%), Gaps = 1/176 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7739




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24881




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32237




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3868_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3868
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6097
                           PA3326_tr
                           translation of PA3326
                           201
                           99.99
                           99.99
                           0
                           1020.0
     

     
     
169881
                           gb|AAG06714.1|AE004755_1
                           (AE004755) probable Clp-family ATP-dependent protease [Pseudomonas aeruginosa PAO1]
                           201
                           99.99
                           99.99
                           0
                           1020.0
     

     
     
169882
                           emb|CAC46961.1|
                           (AL591790) CLP PROTEASE PROTEOLYTIC SUBUNIT PROTEIN [Sinorhizobium meliloti]
                           201
                           55.72
                           70.64
                           6
                           547.0
     

     
     
169883
                           emb|CAB39976.1|
                           (AJ132004) CLP protease proteolytic subunit [Sinorhizobium meliloti]
                           201
                           55.72
                           70.64
                           6
                           547.0
     

     
     
169884
                           gb|AAL43259.1|
                           (AE009176) ATP-dependent Clp protease, proteolytic subunit [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           209
                           50.71
                           66.98
                           16
                           530.0
     

     






      

          
GC ORFID: 46870How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3326Glimmer Score: 

          
Start: 3136775Stop: 3136170

          
Length: 606


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3326 translation of PA3326Homolog Bit Score 397.0

          
Other Homologs:  t_PA1801 (ORF: BLASTX 142.0), psyr_15may02_Scaffold1_revised_gene776 (ORF: BLASTX 139.0), t_PA3326 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACCGATGACAAGGACCGCGAAGGCGGCGACTCCCACGGCGCCATCGGCGCCAAGCTGATGGAGTAC 
GCGCTCAAGGTCAGGAAGGTGTTCGTCACCGGCGGGGTCGACGAGAAGATGGCCAAGGACGTCGTCCAGCAG 
CTGCACATCCTCGCCTCGATCAGCGACGATCCGATCTACATGTTCGTCAATTCTCCGGGTGGCCACGTCGAG 
TCCGGCGACATGATCTTCGACGCGATCCGCTTCATCACACCGAAGGTCATCATGATCGGTTCCGGCAGCGTA 
GCCAGCGCCGGCGCGCTGATTTACGCCGCGGCGGACAAGGAAAACCGCTATTCGCTGCCCAATACCCGCTTC 
CTTCTGCACCAGCCGTCGGGCGGCATCCAGGGGCCGGCGAGCAACATCGAGATCTACCGCCGCGAGATCGTG 
CGGATGAAGGAACGCCTCGACCGGATCTTCGCCGAAGCCACCGGGCAGACGCCGGAGAAGATCAGCGCCGAC 
ACCGAGCGCGATTTCTGGCTGAACGCGGAAGAAGCCGTGCAGTACGGCCTGGTCAACAAGATCATCGTTTCG 
GAACGGGAGATCACGCTGCCTGGCCAGTGA