ViewGene
Locus Name:
GeneID:
Location:

GeneID:3867
TrivialName: PA14_24830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24830
PAO1 Ortholog Locus:PA3035
Sequence Length:597
Protein Length:198
Start: 2171253
Stop: 2170657
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06423.1|AE004728_9 (AE004728) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
Identities = 194/198 (97%), Positives = 196/198 (98%)
Sequence:
ATGAAACTCCATGACCTGGATCTCTCCGGCAACGCCTACAAGGTCCGCCTGTTCCTCTCCCTCATCGGCCGC
GAGGCGACGCTGCGGCCGGTCGATTTCCTCAACCGCGAGCACAAGACCCAAGCCTTCCTCCGCATGAATCCC
CGCGGGCAGATCCCGGTGCTGGAAGACGGCGAGCTGCAACTGGGCGACTCCCATGCCATCCTCGTCTATCTG
GCGCGACGCCATGCCGATCCCGTGTGGTATCCGCTCGACCCCGTCAGCCAGGGCCGAATCGCCTACTGGCTC
AGCTATTCGGCCAACGAGGTGCAGAACGGTCCGGCCAGCGCCCGGCTGATCGCCCGCTTCGACCTGCCGCTG
GATCGCGAGCAGACCCACCAGCGAGGCCTGGAAGTGCTGCGCCTGGTCGAGCGGCACCTGGCCGAGCATCGC
TGGCTGGCCCAAGGCGAACAGCCGAGCATCGCCGACGTGGCCCTCTACCCCTACCTGGCCCTGGCCCCCGAG
GGCGGCCTGGCGCTGGACCACTACCCGGCGCTGAACGCCTGGATCGCCCGCATCCGCGCGCTGCCCGGCTAC
ATCCCGATGCCCGGCCTGTAG
Translation:
MKLHDLDLSGNAYKVRLFLSLIGREATLRPVDFLNREHKTQAFLRMNPRGQIPVLEDGELQLGDSHAILVYL
ARRHADPVWYPLDPVSQGRIAYWLSYSANEVQNGPASARLIARFDLPLDREQTHQRGLEVLRLVERHLAEHR
WLAQGEQPSIADVALYPYLALAPEGGLALDHYPALNAWIARIRALPGYIPMPGL*
AnnotationID:3874GeneID:3867
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 06:06:33
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:()
Synonyms:PA3035
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC48408.1| (AL603642) putative glutathione S-transferase protein
           [Sinorhizobium meliloti]
          Length = 203

 Score =  179 bits (454), Expect = 9e-45
 Identities = 93/193 (48%), Positives = 125/193 (64%), Gaps = 1/193 (0%)






 
Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 211 residues,  95.7% aligned
Score =  115 bits (288), Expect = 5e-27
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 10/204 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7737




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24879




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36015




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3867_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3867
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6096
                           PA3035_tr
                           translation of PA3035
                           198
                           97.97
                           98.98
                           0
                           1019.0
     

     
     
169876
                           gb|AAG06423.1|AE004728_9
                           (AE004728) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
                           198
                           97.97
                           98.98
                           0
                           1019.0
     

     
     
169877
                           emb|CAC48408.1|
                           (AL603642) putative glutathione S-transferase protein [Sinorhizobium meliloti]
                           204
                           46.56
                           62.25
                           7
                           452.0
     

     
     
169878
                           gb|AAQ59449.1|
                           (AE016916) glutathione S-transferase family protein [Chromobacterium violaceum ATCC 12472]
                           205
                           45.36
                           61.46
                           8
                           435.0
     

     
     
169879
                           emb|CAA61942.1|
                           (X89816) GSTA protein [Rhizobium leguminosarum]
                           207
                           42.02
                           57.00
                           13
                           404.0
     

     






      

          
GC ORFID: 46869How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3035Glimmer Score: 

          
Start: 2782675Stop: 2783271

          
Length: 597


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3035 translation of PA3035Homolog Bit Score 397.0

          
Other Homologs:  t_PA3035 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTCCATGACCTGGATCTCTCCGGCAACGCCTACAAGGTCCGCCTGTTCCTCTCCCTCATCGGCCGC 
GAGGCGACGCTGCGGCCGGTCGATTTCCTCAACCGCGAGCACAAGACCCAAGCCTTCCTCCGCATGAATCCC 
CGCGGGCAGATCCCGGTGCTGGAAGACGGCGAGCTGCAACTGGGCGACTCCCATGCCATCCTCGTCTATCTG 
GCGCGACGCCATGCCGATCCCGTGTGGTATCCGCTCGACCCCGTCAGCCAGGGCCGAATCGCCTACTGGCTC 
AGCTATTCGGCCAACGAGGTGCAGAACGGTCCGGCCAGCGCCCGGCTGATCGCCCGCTTCGACCTGCCGCTG 
GATCGCGAGCAGACCCACCAGCGAGGCCTGGAAGTGCTGCGCCTGGTCGAGCGGCACCTGGCCGAGCATCGC 
TGGCTGGCCCAAGGCGAACAGCCGAGCATCGCCGACGTGGCCCTCTACCCCTACCTGGCCCTGGCCCCCGAG 
GGCGGCCTGGCGCTGGACCACTACCCGGCGCTGAACGCCTGGATCGCCCGCATCCGCGCGCTGCCCGGCTAC 
ATCCCGATGCCCGGCCTGTAG