ViewGene
Locus Name:
GeneID:
Location:

GeneID:3866
TrivialName: PA14_33920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33920
PAO1 Ortholog Locus:PA2376
Sequence Length:642
Protein Length:213
Start: 3016342
Stop: 3015701
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05764.1|AE004664_1 (AE004664) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 211/213 (99%), Positives = 212/213 (99%)
Sequence:
ATGCCTAGCACAAGAAGCCTCCCCGCACGGGTCATCGTCGCCGATGACTATCCCCTGTTCCGCGATGGCCTG
AGACGGGTCGTCCGCCGCTACCTCCCGCAAGCCGCCGTAAGCGAAGCGGGCAGCTTCGACGAGGTGCTGCGC
CTGGCCTCGAGCGTCTCGCCGGAACCTCCCGCCCTCTTCCTCCTCGACCTGCTGCTCCCCGGCTTCGCCGCC
TCCCAGTCCATCGAGCGCTTGCGCCGCGCCTATCGGCACAGTGCAATCGTCATCGTCTCGATGCTCGACGAC
CCGCGTCTGGTGGACGAGGTGCTGGCCGCCGGCGCCGACGGCTACCTCGGCAAATCCCTGGAGGCCGGGGAG
ATCGGCACGGCGTTGCAGACGCTCGGCAGCGGCGAACCGGTGGTGCGCCTGCGCGGCGGGTCGAGCGCCAGC
AGTCGGCAACGCGCCCTCCTGGACGCCCTGACCCCACGGCAGCAAGCGGTACTGCGGCTGATCGCCGATGGC
CTGTCGAACAAGGAAATCGGCCGCGCGCTGTCGATCTCTCCGTTCACCGTGCGCGTGCACGTTTCCTCGCTG
CTGCGCGCCCTGGAAGTGAACACGCGGACGGCCGCCGCGGCGCTGGCGGTGAAGGCCGGCTTCTAG
Translation:
MPSTRSLPARVIVADDYPLFRDGLRRVVRRYLPQAAVSEAGSFDEVLRLASSVSPEPPALFLLDLLLPGFAA
SQSIERLRRAYRHSAIVIVSMLDDPRLVDEVLAAGADGYLGKSLEAGEIGTALQTLGSGEPVVRLRGGSSAS
SRQRALLDALTPRQQAVLRLIADGLSNKEIGRALSISPFTVRVHVSSLLRALEVNTRTAAAALAVKAGF*
AnnotationID:3873GeneID:3866
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 18:06:27
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2376
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative putative two-component system transcriptional response regulator
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):two-component regulatory systems
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP31397.1| (AF029714) hypothetical two-components response regulator protein
           [Pseudomonas putida]
          Length = 217

 Score =  186 bits (471), Expect = 1e-46
 Identities = 100/201 (49%), Positives = 138/201 (68%), Gaps = 3/201 (1%)

>gb|AAO54431.1| (AE016859) DNA-binding response regulator, LuxR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 207

 Score =  173 bits (439), Expect = 5e-43
 Identities = 92/201 (45%), Positives = 136/201 (67%), Gaps = 3/201 (1%)








 
Structural Features:
COG2197, CitB, Response regulator containing a CheY-like receiver domain and 
an HTH DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  98.6% aligned
Score =  154 bits (391), Expect = 6e-39
Identities = 80/211 (37%), Positives = 122/211 (57%), Gaps = 9/211 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7735




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24877




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32922




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3866_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3866
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6094
                           PA2376_tr
                           translation of PA2376
                           213
                           99.06
                           99.53
                           0
                           1020.0
     

     
     
169872
                           gb|AAG05764.1|AE004664_1
                           (AE004664) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           213
                           99.06
                           99.53
                           0
                           1020.0
     

     
     
6095
                           PA1397_tr
                           translation of PA1397
                           221
                           45.24
                           61.53
                           19
                           459.0
     

     
     
169874
                           gb|AAG04786.1|AE004569_4
                           (AE004569) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           221
                           45.24
                           61.53
                           19
                           459.0
     

     
     
169873
                           gb|AAP31397.1|
                           (AF029714) hypothetical two-components response regulator protein [Pseudomonas putida]
                           231
                           44.58
                           61.47
                           32
                           472.0
     

     






      

          
GC ORFID: 46868How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2376Glimmer Score: 

          
Start: 1937574Stop: 1938215

          
Length: 642


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2376 translation of PA2376Homolog Bit Score 397.0

          
Other Homologs:  t_PA1397 (ORF: BLASTX 183.0), t_PA2376 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTAGCACAAGAAGCCTCCCCGCACGGGTCATCGTCGCCGATGACTATCCCCTGTTCCGCGATGGCCTG 
AGACGGGTCGTCCGCCGCTACCTCCCGCAAGCCGCCGTAAGCGAAGCGGGCAGCTTCGACGAGGTGCTGCGC 
CTGGCCTCGAGCGTCTCGCCGGAACCTCCCGCCCTCTTCCTCCTCGACCTGCTGCTCCCCGGCTTCGCCGCC 
TCCCAGTCCATCGAGCGCTTGCGCCGCGCCTATCGGCACAGTGCAATCGTCATCGTCTCGATGCTCGACGAC 
CCGCGTCTGGTGGACGAGGTGCTGGCCGCCGGCGCCGACGGCTACCTCGGCAAATCCCTGGAGGCCGGGGAG 
ATCGGCACGGCGTTGCAGACGCTCGGCAGCGGCGAACCGGTGGTGCGCCTGCGCGGCGGGTCGAGCGCCAGC 
AGTCGGCAACGCGCCCTCCTGGACGCCCTGACCCCACGGCAGCAAGCGGTACTGCGGCTGATCGCCGATGGC 
CTGTCGAACAAGGAAATCGGCCGCGCGCTGTCGATCTCTCCGTTCACCGTGCGCGTGCACGTTTCCTCGCTG 
CTGCGCGCCCTGGAAGTGAACACGCGGACGGCCGCCGCGGCGCTGGCGGTGAAGGCCGGCTTCTAG