ViewGene

Locus Name:
GeneID:
Location:

GeneID:3864
TrivialName: PA14_43240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43240
PAO1 Ortholog Locus:PA1644
Sequence Length:609
Protein Length:202
Start: 3853643
Stop: 3853035
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05033.1|AE004592_4 (AE004592) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 200/202 (99%), Positives = 201/202 (99%)
Sequence:
ATGCAACTGGACTTCACCACCATCGCTCCCGCCGAGGCCTATCGCTGGTTGGCTTCCACCGTCACCCCGCGA
CCGATTGCCTGGGTCTCGACCCTGTCCGCCGAGGGCGCCAGCAACCTGGCCCCGTTCAGCTTCTTCCAGGTG
ATCAGCGACGAGCCGCCGACCCTGATGGTCAACGTCAGCCTGCGCGACGACGGCAGCCTCAAGGACACCCTG
CGCAACGTCCAGGCCACCGGGCAGTTGGTGATCCACCTGGTCGGCGCCGCCCAGGCAGAGACCATGAACGCC
ACCTCCGCCTGGCTGCCCCATGGCGTGAGCGAGATCGAGACGGTCGGCATCCCTACCGTGTCCAGCGTACGC
GTGGCGCCGCCGCGGATCGCCGCGGCGGCGGTGGCCTTCGAGTGCGAGGTGGCGGAGATCAAGCCGTATCCG
GCGGAGAACCCCAATTGCCACCTGATCTTCGCCCGCGTGCTGCTGGCCCATGTCGACGATGCCGTGCTGGCC
GACGAGCGCCATGTGGATAGCGACAGGCTCGACCTGGTCGGTCGCCTGGGCGGCAGCCACTACAGCTATACC
CGCGACACGTTCAGCATGATCCGGCCCAGGTAG
Translation:
MQLDFTTIAPAEAYRWLASTVTPRPIAWVSTLSAEGASNLAPFSFFQVISDEPPTLMVNVSLRDDGSLKDTL
RNVQATGQLVIHLVGAAQAETMNATSAWLPHGVSEIETVGIPTVSSVRVAPPRIAAAAVAFECEVAEIKPYP
AENPNCHLIFARVLLAHVDDAVLADERHVDSDRLDLVGRLGGSHYSYTRDTFSMIRPR*
AnnotationID:3871GeneID:3864
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 16:04:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1644
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7731
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24873
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37257
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3864_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3864

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6092 PA1644_tr translation of PA1644 202 99.00 99.50 0 1021.0
169852 gb|AAG05033.1|AE004592_4 (AE004592) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 202 99.00 99.50 0 1021.0
169853 dbj|BAC48663.1| (AP005947) blr3398 [Bradyrhizobium japonicum USDA 110] 208 39.90 55.76 9 382.0
169855 gb|AAC07037.1| (AE000714) putative protein [Aquifex aeolicus VF5] 209 37.32 55.50 20 350.0
169854 emb|CAE29606.1| (BX572606) conserved hypothetical protein [Rhodopseudomonas palustris CGA009] 235 36.17 49.78 37 374.0
GC ORFID: 46866How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1644Glimmer Score:
Start: 1100266Stop: 1100874
Length: 609
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1644 translation of PA1644Homolog Bit Score 397.0
Other Homologs: t_PA1644 (ORF: GLIMMER)
GC ORF Sequence
ATGCAACTGGACTTCACCACCATCGCTCCCGCCGAGGCCTATCGCTGGTTGGCTTCCACCGTCACCCCGCGA
CCGATTGCCTGGGTCTCGACCCTGTCCGCCGAGGGCGCCAGCAACCTGGCCCCGTTCAGCTTCTTCCAGGTG
ATCAGCGACGAGCCGCCGACCCTGATGGTCAACGTCAGCCTGCGCGACGACGGCAGCCTCAAGGACACCCTG
CGCAACGTCCAGGCCACCGGGCAGTTGGTGATCCACCTGGTCGGCGCCGCCCAGGCAGAGACCATGAACGCC
ACCTCCGCCTGGCTGCCCCATGGCGTGAGCGAGATCGAGACGGTCGGCATCCCTACCGTGTCCAGCGTACGC
GTGGCGCCGCCGCGGATCGCCGCGGCGGCGGTGGCCTTCGAGTGCGAGGTGGCGGAGATCAAGCCGTATCCG
GCGGAGAACCCCAATTGCCACCTGATCTTCGCCCGCGTGCTGCTGGCCCATGTCGACGATGCCGTGCTGGCC
GACGAGCGCCATGTGGATAGCGACAGGCTCGACCTGGTCGGTCGCCTGGGCGGCAGCCACTACAGCTATACC
CGCGACACGTTCAGCATGATCCGGCCCAGGTAG