ViewGene
Locus Name:
GeneID:
Location:

GeneID:3863
TrivialName: PA14_49040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49040
PAO1 Ortholog Locus:PA1191
Sequence Length:594
Protein Length:197
Start: 4355849
Stop: 4356442
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04580.1|AE004549_7 (AE004549) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 196/197 (99%), Positives = 197/197 (100%)
Sequence:
ATGACTCCCGACCTCGACCACCGCCTCGACCTCGCCGGGCAGATCCTCTGCCTGCTGCGCGAGCATCCCGAG
GGGCTTTCCGAATACCAGCTGATCCAGCTGCTGAAGGCCCGCCATTCGACGCATATCCCCCATCGCGAACTG
GCCGACAAGCTGGTGCTGTTCCGCACCCATTTCCTCCTGTTCAACGCGCTCTACCACCTGCGCGACCACCTC
TGGGCCGAGCGCGAGGCGCACCTGGAGATCAGCCCGCTGAGCCTGCGCCTGCGTCCTTACGTGGATGGCACG
CAGGCGCTGGAACAGGGCGATCCGCTGCGCGACTACTACCTCAACCTGCGTCACCTGGGGGAGACCAGCGAG
GCCGACGTCGAGCGGCTGCTGCAGAGTTTCTGGACGCGCATGCAGGGCAGCGAGGAGAAGGCCGCCGCCCTC
GCCCTGTTCGAGCTGGAAGGCGCGGTCGACTATCCCGCCATCAAGCTGCGCTACCGGCAACTGGTCAGCCAG
CACCATCCCGACCGCGGCGGCAGCACCGCGCGCCTGCAATCGATCAACAAGGCGATGGAAATACTGCAACGC
TATTACAGCCGGCCGTGA
Translation:
MTPDLDHRLDLAGQILCLLREHPEGLSEYQLIQLLKARHSTHIPHRELADKLVLFRTHFLLFNALYHLRDHL
WAEREAHLEISPLSLRLRPYVDGTQALEQGDPLRDYYLNLRHLGETSEADVERLLQSFWTRMQGSEEKAAAL
ALFELEGAVDYPAIKLRYRQLVSQHHPDRGGSTARLQSINKAMEILQRYYSRP*
AnnotationID:3870GeneID:3863
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 07:07:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1191
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC62210.1| (AP005087) DnaJ-related protein [Vibrio parahaemolyticus]
          Length = 206

 Score = 86.7 bits (213), Expect = 8e-17
 Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 15/187 (8%)

>gb|AAN56700.1|AE015805_9 (AE015805) DnaJ domain protein [Shewanella oneidensis MR-1]
          Length = 214

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 11/147 (7%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7729




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24871




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37574




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3863_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3863
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6091
                           PA1191_tr
                           translation of PA1191
                           197
                           99.49
                           99.99
                           0
                           1021.0
     

     
     
169851
                           gb|AAG04580.1|AE004549_7
                           (AE004549) hypothetical protein PA1191 [Pseudomonas aeruginosa PAO1]
                           197
                           99.49
                           99.99
                           0
                           1021.0
     

     






      

          
GC ORFID: 46865How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1191Glimmer Score: 

          
Start: 598059Stop: 597466

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1191 translation of PA1191Homolog Bit Score 397.0

          
Other Homologs:  t_PA1191 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCCCGACCTCGACCACCGCCTCGACCTCGCCGGGCAGATCCTCTGCCTGCTGCGCGAGCATCCCGAG 
GGGCTTTCCGAATACCAGCTGATCCAGCTGCTGAAGGCCCGCCATTCGACGCATATCCCCCATCGCGAACTG 
GCCGACAAGCTGGTGCTGTTCCGCACCCATTTCCTCCTGTTCAACGCGCTCTACCACCTGCGCGACCACCTC 
TGGGCCGAGCGCGAGGCGCACCTGGAGATCAGCCCGCTGAGCCTGCGCCTGCGTCCTTACGTGGATGGCACG 
CAGGCGCTGGAACAGGGCGATCCGCTGCGCGACTACTACCTCAACCTGCGTCACCTGGGGGAGACCAGCGAG 
GCCGACGTCGAGCGGCTGCTGCAGAGTTTCTGGACGCGCATGCAGGGCAGCGAGGAGAAGGCCGCCGCCCTC 
GCCCTGTTCGAGCTGGAAGGCGCGGTCGACTATCCCGCCATCAAGCTGCGCTACCGGCAACTGGTCAGCCAG 
CACCATCCCGACCGCGGCGGCAGCACCGCGCGCCTGCAATCGATCAACAAGGCGATGGAAATACTGCAACGC 
TATTACAGCCGGCCGTGA