ViewGene
Locus Name:
GeneID:
Location:

GeneID:3862
TrivialName: PA14_50320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50320
PAO1 Ortholog Locus:PA1089
Sequence Length:603
Protein Length:200
Start: 4473548
Stop: 4472946
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04478.1|AE004539_20 (AE004539) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 200/200 (100%), Positives = 200/200 (100%)
Sequence:
GTGCGCACTGCCTACTGCTTCGACCTGGATGGAACCCTGACCCGTCAGGAACTGTTGCCGCTGATCGCGTCG
TCCGTCGGTCTCGAAGACGAGATCGAGGTGCTGACCCAGGCCACCATCGACGGTTTCCTGCCGTTCGACAAA
TCCTTCAAGCTGCGTGTCCGCTTGCTGCGCGACGCGAACCTGGAGTGGATCCACAGCGCCCTGCGTCAGCAG
GTGGAGCTGGACCCGCATATCCAGGCGTTCATTTCCGCGCGCCCTCGGCAATGCTTCGTCGTGACCGGCAAC
CTGGACCTCTGGGTCGAGCCGGTGCTCGAACGCCTCGGAGTGCGCAGCTTCACCTCGCGGGCGCGGATGCGC
GACGGACGTCTGGAGGGAGTCGAGGAGATCCTCCACAAGGGCGATGCGGTGACCTCCCTGCGCGGCGAGTTC
GAGCGCATCGTCGCCGTCGGCGAAGGGATGAACGACGTGCCGATGTTCGAGGCCGCCGATCTGCGCGTGGCC
TACGGCGGAGTGCATGTGCCGAACCGGGTGCTGACCGGCCTGAGCGATTTCGTGGTCCATGAAGGAGAAGCC
CTGTGTCGCCTATTGAACATGCTGTGA
Translation:
MRTAYCFDLDGTLTRQELLPLIASSVGLEDEIEVLTQATIDGFLPFDKSFKLRVRLLRDANLEWIHSALRQQ
VELDPHIQAFISARPRQCFVVTGNLDLWVEPVLERLGVRSFTSRARMRDGRLEGVEEILHKGDAVTSLRGEF
ERIVAVGEGMNDVPMFEAADLRVAYGGVHVPNRVLTGLSDFVVHEGEALCRLLNML*
AnnotationID:3869GeneID:3862
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 16:04:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1089
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0560
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and metabolism]

             CD-Length = 212 residues,  98.6% aligned
             Score =  128 bits (322), Expect = 6e-31






   
Genomic Context:






   
Comment:


















    ReferenceID:14945




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24869




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3862
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6090
                           PA1089_tr
                           translation of PA1089
                           200
                           99.99
                           99.99
                           0
                           1020.0
     

     
     
169850
                           gb|AAG04478.1|AE004539_20
                           (AE004539) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           200
                           99.50
                           99.99
                           0
                           1017.0
     

     






      

          
GC ORFID: 46864How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1089Glimmer Score: 

          
Start: 480360Stop: 480962

          
Length: 603


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1089 translation of PA1089Homolog Bit Score 397.0

          
Other Homologs:  t_PA1089 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGCACTGCCTACTGCTTCGACCTGGATGGAACCCTGACCCGTCAGGAACTGTTGCCGCTGATCGCGTCG 
TCCGTCGGTCTCGAAGACGAGATCGAGGTGCTGACCCAGGCCACCATCGACGGTTTCCTGCCGTTCGACAAA 
TCCTTCAAGCTGCGTGTCCGCTTGCTGCGCGACGCGAACCTGGAGTGGATCCACAGCGCCCTGCGTCAGCAG 
GTGGAGCTGGACCCGCATATCCAGGCGTTCATTTCCGCGCGCCCTCGGCAATGCTTCGTCGTGACCGGCAAC 
CTGGACCTCTGGGTCGAGCCGGTGCTCGAACGCCTCGGAGTGCGCAGCTTCACCTCGCGGGCGCGGATGCGC 
GACGGACGTCTGGAGGGAGTCGAGGAGATCCTCCACAAGGGCGATGCGGTGACCTCCCTGCGCGGCGAGTTC 
GAGCGCATCGTCGCCGTCGGCGAAGGGATGAACGACGTGCCGATGTTCGAGGCCGCCGATCTGCGCGTGGCC 
TACGGCGGAGTGCATGTGCCGAACCGGGTGCTGACCGGCCTGAGCGATTTCGTGGTCCATGAAGGAGAAGCC 
CTGTGTCGCCTATTGAACATGCTGTGA