ViewGene

Locus Name:
GeneID:
Location:

GeneID:3861
TrivialName: PA14_02190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02190
PAO1 Ortholog Locus:PA0174
Sequence Length:603
Protein Length:200
Start: 197542
Stop: 196940
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03564.1|AE004455_5 (AE004455) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 199/200 (99%), Positives = 200/200 (100%)
Sequence:
ATGAATCTCCAGGCCCGGGAAGGCGCGCCGCTGAACCGCTACTACGATCCGTACTTCGCCTGCGATGCGGTG
AAGCTGTTGCCCGGCGAGTACTTCGCCAGCGGCGAAGACCTGGTGATCGTCACCGTGCTCGGCTCCTGCGTC
TCGGTGTGCCTGCGCGACCCGCTCAACGGCATCGCCGGGATGAACCACTTCATGCTCCCCGAGCGCGGCcTC
GGCGGCGACCCGGCCTCGCCGTCGGCGCGCTACGGCAGCCACGCCATGGAACTGCTGATCAACCGCATGCTG
GCCCTCGGCGCCAACCGCGAGCGCCTGCAGGCCAAGGTCTTCGGCGGCGGCTCGGTACTGCGCCAGATCAGC
GCCGCCATCGGCCAGCGCAACGTCGAGTTCACCCTCGACTACCTGGCCACCGAGCGTATCCCGCTGCTCGCC
AGCGACGTGCTGGAGGCCTTCCCGCGCAAGATCTACTTCTTCCCGCGCAATGGCCGGGTCCTGGTGAAGTCC
CTGGTGGAGCTGAAGAACGACACCGTGCTGCAGCGTGAACGCGACTACCGCCGCCGTATCGATCGCAACGCG
GACGGCGGCCCCATCGACCTGTTCTGA
Translation:
MNLQAREGAPLNRYYDPYFACDAVKLLPGEYFASGEDLVIVTVLGSCVSVCLRDPLNGIAGMNHFMLPERGL
GGDPASPSARYGSHAMELLINRMLALGANRERLQAKVFGGGSVLRQISAAIGQRNVEFTLDYLATERIPLLA
SDVLEAFPRKIYFFPRNGRVLVKSLVELKNDTVLQRERDYRRRIDRNADGGPIDLF*
AnnotationID:3868GeneID:3861
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:32
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis protein
Cell Localization:()
Synonyms:cheD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1871,pfam03975
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN55172.1|AE015654_9 (AE015654) chemotaxis protein CheD [Shewanella oneidensis MR-1]
          Length = 208

 Score =  209 bits (532), Expect = 8e-54
 Identities = 105/191 (54%), Positives = 138/191 (72%), Gaps = 2/191 (1%)

>emb|CAD18555.1| (AL646084) PROBABLE CHEMOTAXIS PROTEIN [Ralstonia solanacearum]
          Length = 233

 Score =  181 bits (458), Expect = 3e-45
 Identities = 89/193 (46%), Positives = 126/193 (65%), Gaps = 1/193 (0%)

Structural Features:
COG1871, CheD, Chemotaxis protein; stimulates methylation of MCP proteins 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 164 residues,  97.0% aligned
Score =  208 bits (531), Expect = 3e-55
Identities = 80/159 (50%), Positives = 100/159 (62%), Gaps = 2/159 (1%)

pfam03975, CheD, CheD. This chemotaxis protein stimulates methylation of MCP proteins.
CD-Length = 110 residues,  99.1% aligned
Score =  140 bits (354), Expect = 1e-34
Identities = 57/110 (51%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Genomic Context:
Comment:
ReferenceID:7725
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24867
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33541
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3861_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3861

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6089 PA0174_tr translation of PA0174 200 99.50 99.99 0 1023.0
169832 gb|AAG03564.1|AE004455_5 (AE004455) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 200 99.50 99.99 0 1023.0
169833 gb|AAN55172.1|AE015654_9 (AE015654) chemotaxis protein CheD [Shewanella oneidensis MR-1] 209 51.19 67.94 10 531.0
169840 gb|AAM41156.1| (AE012289) chemotaxis protein [Xanthomonas campestris pv. campestris str. ATCC 33913] 202 46.03 59.40 6 416.0
169835 gb|AAQ61098.1| (AE016922) probable chemotaxis protein [Chromobacterium violaceum ATCC 12472] 205 45.85 64.87 9 457.0
GC ORFID: 46863How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0174Glimmer Score:
Start: 5998881Stop: 5998279
Length: 603
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0174 translation of PA0174Homolog Bit Score 398.0
Other Homologs: t_PA0174 (ORF: GLIMMER)
GC ORF Sequence
ATGAATCTCCAGGCCCGGGAAGGCGCGCCGCTGAACCGCTACTACGATCCGTACTTCGCCTGCGATGCGGTG
AAGCTGTTGCCCGGCGAGTACTTCGCCAGCGGCGAAGACCTGGTGATCGTCACCGTGCTCGGCTCCTGCGTC
TCGGTGTGCCTGCGCGACCCGCTCAACGGCATCGCCGGGATGAACCACTTCATGCTCCCCGAGCGCGGCcTC
GGCGGCGACCCGGCCTCGCCGTCGGCGCGCTACGGCAGCCACGCCATGGAACTGCTGATCAACCGCATGCTG
GCCCTCGGCGCCAACCGCGAGCGCCTGCAGGCCAAGGTCTTCGGCGGCGGCTCGGTACTGCGCCAGATCAGC
GCCGCCATCGGCCAGCGCAACGTCGAGTTCACCCTCGACTACCTGGCCACCGAGCGTATCCCGCTGCTCGCC
AGCGACGTGCTGGAGGCCTTCCCGCGCAAGATCTACTTCTTCCCGCGCAATGGCCGGGTCCTGGTGAAGTCC
CTGGTGGAGCTGAAGAACGACACCGTGCTGCAGCGTGAACGCGACTACCGCCGCCGTATCGATCGCAACGCG
GACGGCGGCCCCATCGACCTGTTCTGA