ViewGene

Locus Name:
GeneID:
Location:

GeneID:3860
TrivialName: PA14_64420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64420
PAO1 Ortholog Locus:PA4871
Sequence Length:615
Protein Length:204
Start: 5739073
Stop: 5739687
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08256.1|AE004900_10 (AE004900) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 202/204 (99%), Positives = 203/204 (99%)
Sequence:
ATGATGGGACCGTTCCGCCGCCTCGCCCACCTGATCAACCAGGGCCGCCAGCTCGACGCCGCGCTCGCCGGC
GATCCGTTCGCCCTGCCGGCGCCGGAGGACCGCTATAGCGTCCGGCAACTGCACGGCCTGTATCCGCGCCGT
CATCCCGGTCTCTACGCACCGCTGCTCGGCAGCCTGGCGCTGCTGCTCGGTGCCGCGCCGCTGGGTCTTGCC
GCGCTGCGCCTGGCATTGCCGGAGGCTCCTTTGCGGCCGCTGGGCTGGCTCTCCGCCCTGCCGCTGCTGGCG
GCCTGGCTGTGGCTGATCGCCCTGCTCTCCCGCGGCGCCAGCCTCGGCCCGCGCCTGGCCCGCGACGCCAGC
CTGCTGCTGGTCGGCGCCGGGCTCCTGCTGCGCCTGGCCAGCGGCGAGACGTCGGGCCTGGTGGCGCTCGGC
GGCGGCGCCTGTGCCTGGCTGCTGTTCAACAGCCGCGCGATGCAACGCTACATGGAACTGGTCTACGCCCAG
CGCCTGTACCGCGCCCAGTCGGCCAACCGCCCCGGTTCGGCGCAGCGGCGCCTGGCCAACCAGGCCGCCTAC
CGCGAACGCAAGCGACGCGAGCGCTCCGGGCGATCCTGA
Translation:
MMGPFRRLAHLINQGRQLDAALAGDPFALPAPEDRYSVRQLHGLYPRRHPGLYAPLLGSLALLLGAAPLGLA
ALRLALPEAPLRPLGWLSALPLLAAWLWLIALLSRGASLGPRLARDASLLLVGAGLLLRLASGETSGLVALG
GGACAWLLFNSRAMQRYMELVYAQRLYRAQSANRPGSAQRRLANQAAYRERKRRERSGRS*
AnnotationID:3867GeneID:3860
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4871
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7723
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24865
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3860

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6088 PA4871_tr translation of PA4871 204 99.01 99.50 0 1023.0
169831 gb|AAG08256.1|AE004900_10 (AE004900) hypothetical protein PA4871 [Pseudomonas aeruginosa PAO1] 204 99.01 99.50 0 1023.0
GC ORFID: 46862How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4871Glimmer Score:
Start: 5002754Stop: 5003368
Length: 615
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4871 translation of PA4871Homolog Bit Score 398.0
Other Homologs: t_PA4871 (ORF: GLIMMER)
GC ORF Sequence
ATGATGGGACCGTTCCGCCGCCTCGCCCACCTGATCAACCAGGGCCGCCAGCTCGACGCCGCGCTCGCCGGC
GATCCGTTCGCCCTGCCGGCGCCGGAGGACCGCTATAGCGTCCGGCAACTGCACGGCCTGTATCCGCGCCGT
CATCCCGGTCTCTACGCACCGCTGCTCGGCAGCCTGGCGCTGCTGCTCGGTGCCGCGCCGCTGGGTCTTGCC
GCGCTGCGCCTGGCATTGCCGGAGGCTCCTTTGCGGCCGCTGGGCTGGCTCTCCGCCCTGCCGCTGCTGGCG
GCCTGGCTGTGGCTGATCGCCCTGCTCTCCCGCGGCGCCAGCCTCGGCCCGCGCCTGGCCCGCGACGCCAGC
CTGCTGCTGGTCGGCGCCGGGCTCCTGCTGCGCCTGGCCAGCGGCGAGACGTCGGGCCTGGTGGCGCTCGGC
GGCGGCGCCTGTGCCTGGCTGCTGTTCAACAGCCGCGCGATGCAACGCTACATGGAACTGGTCTACGCCCAG
CGCCTGTACCGCGCCCAGTCGGCCAACCGCCCCGGTTCGGCGCAGCGGCGCCTGGCCAACCAGGCCGCCTAC
CGCGAACGCAAGCGACGCGAGCGCTCCGGGCGATCCTGA